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PMID: 18029361 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Panzea: an update on new content and features.

Nucleic acids research ·Vol. 36 ·No. Database issue ·2008-01-00 ·Pages D1041-3

Canaran P, Buckler ES, Glaubitz JC, Stein L, Sun Q, Zhao W, Ware D

Abstract

Panzea (http://www.panzea.org), the public web site of the project 'Molecular and Functional Diversity in the Maize Genome', has expanded over the past two years in data content, display tools and informational sections. The most significant data content expansions occurred for the single nucleotide polymorphism (SNP), sequencing, isozyme and phenotypic data types. We have enhanced our existing web display tools and have launched a number of new tools for data display and analysis. For example, we have implemented one that allows users to find polymorphisms between two accessions, a geographic map tool to visualize the geographic distribution of SNPs, simple sequence repeats (SSRs) and isozyme alleles and a graphical view of the placement of Panzea markers and genes/loci on genetic and physical maps. One goal of the informatics component of our project has been to generate code that can be used by other groups. We have enhanced our existing code base and have made our new tools available. Finally, we have also made available new informational sections as part of our educational and outreach efforts.

MeSH Terms
Chromosome Mapping Databases, Genetic Gene Frequency Genetic Markers Genome, Plant Genomics Geography Internet Isoenzymes/genetics Phenotype Polymorphism, Single Nucleotide Software User-Computer Interface Zea mays/genetics
Chemicals
Genetic Markers Isoenzymes
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Canaran Payan
Cold Spring Harbor Laboratory, Cold Spring Harbor, NY 11724, USA.
Buckler Edward S
Glaubitz Jeffrey C
Stein Lincoln
Sun Qi
Zhao Wei
Ware Doreen
References (6)
6 references, click to expand
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2008-01-00
Epub
2007-00-19
Pages
D1041-3
Language
English
Region
England
NLM ID
0411011
PMCID
PMC2238995
Subset
IM
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