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PMID: 17890362 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

New properties of Drosophila fab-7 insulator.

Genetics ·Vol. 177 ·No. 1 ·2007-09-00 ·Pages 113-21

Rodin S, Kyrchanova O, Pomerantseva E, Parshikov A, Georgiev P

Abstract

In the Abd-B 3' cis-regulatory region, which is subdivided into a series of iab domains, boundary elements have previously been detected, including the Fab-7 element providing for the autonomous functioning of the iab-6 and iab-7 cis-regulatory domains. Here, it has been shown that a single copy of the 860-bp Fab-7 insulator effectively blocks the yellow and white enhancers. The eye and testis enhancers can stimulate the white promoter across the pair of Fab-7, which is indicative of a functional interaction between the insulators. Unexpectedly, Fab-7 has proved to lose the enhancer-blocking activity when placed near the white promoter. It seems likely that Fab-7 strengthens the relatively weak white promoter, which leads to the efficient enhancer-promoter interaction and insulator bypass.

MeSH Terms
ATP-Binding Cassette Transporters/genetics Animals Animals, Genetically Modified Drosophila Proteins/genetics Drosophila melanogaster/embryology,genetics Enhancer Elements, Genetic/genetics Eye/cytology,metabolism Eye Proteins/genetics Female Gene Expression Regulation/genetics Insulator Elements/genetics Male Promoter Regions, Genetic Transgenes/physiology
Chemicals
ATP-Binding Cassette Transporters Drosophila Proteins Eye Proteins w protein, Drosophila y protein, Drosophila
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Rodin Sergey
Department of the Control of Genetic Processes, Institute of Gene Biology, Russian Academy of Sciences, Moscow 119334, Russia.
Kyrchanova Olga
Pomerantseva Ekaterina
Parshikov Alexander
Georgiev Pavel
References (67)
67 references, click to expand
  1. Probing long-distance regulatory interactions in the Drosophila melanogaster bithorax complex using Dam identification.
    Nat Genet. 2006 Aug;38(8):931-5 PMID: 16823379
  2. Insulators: exploiting transcriptional and epigenetic mechanisms.
    Nat Rev Genet. 2006 Sep;7(9):703-13 PMID: 16909129
  3. Transcriptional control thrown for a loop.
    Curr Opin Genet Dev. 2006 Oct;16(5):490-5 PMID: 16904310
  4. The molecular genetics of the bithorax complex of Drosophila: cis-regulation in the Abdominal-B domain.
    EMBO J. 1990 Dec;9(13):4277-86 PMID: 2265608
  5. A position-effect assay for boundaries of higher order chromosomal domains.
    Cell. 1991 Mar 8;64(5):941-50 PMID: 1848159
  6. Repression of hsp70 heat shock gene transcription by the suppressor of hairy-wing protein of Drosophila melanogaster.
    Mol Cell Biol. 1991 Apr;11(4):1894-900 PMID: 1900919
  7. Molecular definition of the morphogenetic and regulatory functions and the cis-regulatory elements of the Drosophila Abd-B homeotic gene.
    Development. 1991 Feb;111(2):393-405 PMID: 1680045
  8. Control of the expression of the bithorax complex genes abdominal-A and abdominal-B by cis-regulatory regions in Drosophila embryos.
    Development. 1991 Feb;111(2):437-49 PMID: 1680047
  9. A group of scs elements function as domain boundaries in an enhancer-blocking assay.
    Mol Cell Biol. 1992 May;12(5):2424-31 PMID: 1569958
  10. Molecular analysis of the zeste-white interaction reveals a promoter-proximal element essential for distant enhancer-promoter communication.
    Genetics. 1992 May;131(1):79-90 PMID: 1375573
  11. DNA position-specific repression of transcription by a Drosophila zinc finger protein.
    Genes Dev. 1992 Oct;6(10):1865-73 PMID: 1327958
  12. The su(Hw) protein insulates expression of the Drosophila melanogaster white gene from chromosomal position-effects.
    EMBO J. 1993 Feb;12(2):435-42 PMID: 8382607
  13. Putting boundaries on silence.
    Cell. 1999 Nov 24;99(5):459-62 PMID: 10589674
  14. A novel cis-regulatory element, the PTS, mediates an anti-insulator activity in the Drosophila embryo.
    Cell. 1999 Dec 10;99(6):567-75 PMID: 10612393
  15. The Fab-8 boundary defines the distal limit of the bithorax complex iab-7 domain and insulates iab-7 from initiation elements and a PRE in the adjacent iab-8 domain.
    Development. 2000 Feb;127(4):779-90 PMID: 10648236
  16. Application of Cre/loxP in Drosophila. Site-specific recombination and transgene coplacement.
    Methods Mol Biol. 2000;136:487-95 PMID: 10840736
  17. Effects of cis arrangement of chromatin insulators on enhancer-blocking activity.
    Science. 2001 Jan 19;291(5503):493-5 PMID: 11161205
  18. Loss of insulator activity by paired Su(Hw) chromatin insulators.
    Science. 2001 Jan 19;291(5503):495-8 PMID: 11161206
  19. Coupling of enhancer and insulator properties identified in two retrotransposons modulates their mutagenic impact on nearby genes.
    Mol Cell Biol. 2002 Mar;22(6):1767-77 PMID: 11865056
  20. Chromatin boundaries in budding yeast: the nuclear pore connection.
    Cell. 2002 May 31;109(5):551-62 PMID: 12062099
  21. The barrier function of an insulator couples high histone acetylation levels with specific protection of promoter DNA from methylation.
    Genes Dev. 2002 Jun 15;16(12):1540-54 PMID: 12080092
  22. GAGA factor and the TFIID complex collaborate in generating an open chromatin structure at the Drosophila melanogaster hsp26 promoter.
    Mol Cell Biol. 2002 Sep;22(17):6148-57 PMID: 12167709
  23. The insulation of genes from external enhancers and silencing chromatin.
    Proc Natl Acad Sci U S A. 2002 Dec 10;99 Suppl 4:16433-7 PMID: 12154228
  24. The functional analysis of insulator interactions in the Drosophila embryo.
    Proc Natl Acad Sci U S A. 2003 Apr 29;100(9):5223-8 PMID: 12700350
  25. A test of insulator interactions in Drosophila.
    EMBO J. 2003 May 15;22(10):2463-71 PMID: 12743040
  26. Chromatin insulators.
    Annu Rev Genet. 2006;40:107-38 PMID: 16953792
  27. Study of the functional interaction between Mcp insulators from the Drosophila bithorax complex: effects of insulator pairing on enhancer-promoter communication.
    Mol Cell Biol. 2007 Apr;27(8):3035-43 PMID: 17283051
  28. A new homeotic mutation in the Drosophila bithorax complex removes a boundary separating two domains of regulation.
    EMBO J. 1990 Aug;9(8):2579-85 PMID: 1973385
  29. Genetic transformation of Drosophila with transposable element vectors.
    Science. 1982 Oct 22;218(4570):348-53 PMID: 6289436
  30. Analysis of P transposable element functions in Drosophila.
    Cell. 1984 Aug;38(1):135-46 PMID: 6088058
  31. Genetic organization of Drosophila bithorax complex.
    Nature. 1985 Jan 10-18;313(5998):108-13 PMID: 3917555
  32. The abdominal region of the bithorax complex.
    Cell. 1985 Nov;43(1):81-96 PMID: 3935319
  33. Separate regulatory elements are responsible for the complex pattern of tissue-specific and developmental transcription of the yellow locus in Drosophila melanogaster.
    Genes Dev. 1987 Nov;1(9):996-1004 PMID: 3123324
  34. The bithorax complex.
    Annu Rev Genet. 1987;21:285-319 PMID: 3327467
  35. Regulatory elements involved in the tissue-specific expression of the yellow gene of Drosophila.
    Mol Gen Genet. 1989 Jul;218(1):118-26 PMID: 2550760
  36. The FLP recombinase of yeast catalyzes site-specific recombination in the Drosophila genome.
    Cell. 1989 Nov 3;59(3):499-509 PMID: 2509077
  37. Tissue specific and position independent expression of the complete gene domain for chicken lysozyme in transgenic mice.
    EMBO J. 1990 Sep;9(9):2843-8 PMID: 2390972
  38. Genomic insulators: connecting properties to mechanism.
    Curr Opin Cell Biol. 2003 Jun;15(3):259-65 PMID: 12787766
  39. A novel boundary element may facilitate independent gene regulation in the Antennapedia complex of Drosophila.
    EMBO J. 2003 Jun 16;22(12):3113-21 PMID: 12805225
  40. Communication over a large distance: enhancers and insulators.
    Biochem Cell Biol. 2003 Jun;81(3):241-51 PMID: 12897858
  41. Anything else but GAGA: a nonhistone protein complex reshapes chromatin structure.
    Trends Genet. 2004 Jan;20(1):15-22 PMID: 14698615
  42. Developmental modulation of Fab-7 boundary function.
    Development. 2004 Oct;131(19):4743-9 PMID: 15329342
  43. A gene complex controlling segmentation in Drosophila.
    Nature. 1978 Dec 7;276(5688):565-70 PMID: 103000
  44. Transposition of cloned P elements into Drosophila germ line chromosomes.
    Science. 1982 Oct 22;218(4570):341-7 PMID: 6289435
  45. The bluetail transposon: evidence for independent cis-regulatory domains and domain boundaries in the bithorax complex.
    EMBO J. 1993 Mar;12(3):1087-97 PMID: 8384551
  46. Mcp and Fab-7: molecular analysis of putative boundaries of cis-regulatory domains in the bithorax complex of Drosophila melanogaster.
    Nucleic Acids Res. 1994 Aug 11;22(15):3138-46 PMID: 7915032
  47. Modulation of enhancer-promoter interactions by insulators in the Drosophila embryo.
    Nature. 1995 Aug 10;376(6540):533-6 PMID: 7637789
  48. A P element containing suppressor of hairy-wing binding regions has novel properties for mutagenesis in Drosophila melanogaster.
    Genetics. 1995 Nov;141(3):1061-74 PMID: 8582613
  49. Effects of the su(Hw) insulator protein on the expression of the divergently transcribed Drosophila yolk protein genes.
    EMBO J. 1995 Dec 15;14(24):6258-67 PMID: 8557045
  50. The Fab-7 element of the bithorax complex attenuates enhancer-promoter interactions in the Drosophila embryo.
    Genes Dev. 1996 Dec 15;10(24):3195-201 PMID: 8985187
  51. Fab-7 functions as a chromatin domain boundary to ensure proper segment specification by the Drosophila bithorax complex.
    Genes Dev. 1996 Dec 15;10(24):3202-15 PMID: 8985188
  52. In situ dissection of the Fab-7 region of the bithorax complex into a chromatin domain boundary and a Polycomb-response element.
    Development. 1997 May;124(9):1809-20 PMID: 9165128
  53. Chromatin insulator elements block the silencing of a target gene by the Drosophila polycomb response element (PRE) but allow trans interactions between PREs on different chromosomes.
    Genetics. 1997 Sep;147(1):209-21 PMID: 9286681
  54. Polycomb group repression is blocked by the Drosophila suppressor of Hairy-wing [su(Hw)] insulator.
    Genetics. 1998 Jan;148(1):331-9 PMID: 9475743
  55. Chromatin domain boundaries in the Bithorax complex.
    Cell Mol Life Sci. 1998 Jan;54(1):60-70 PMID: 9487387
  56. Characterization of the transvection mediating region of the abdominal-B locus in Drosophila.
    Development. 1999 Jun;126(14):3057-65 PMID: 10375498
  57. Distant liaisons: long-range enhancer-promoter interactions in Drosophila.
    Curr Opin Genet Dev. 1999 Oct;9(5):505-14 PMID: 10508687
  58. Boundary elements and nuclear organization.
    Biol Cell. 2004 Oct;96(8):617-29 PMID: 15519696
  59. The enhancer-blocking activity of the Fab-7 boundary from the Drosophila bithorax complex requires GAGA-factor-binding sites.
    Genetics. 2004 Nov;168(3):1371-84 PMID: 15579691
  60. Remote control of gene transcription.
    Hum Mol Genet. 2005 Apr 15;14 Spec No 1:R101-11 PMID: 15809261
  61. The Mcp element from the bithorax complex contains an insulator that is capable of pairwise interactions and can facilitate enhancer-promoter communication.
    Mol Cell Biol. 2005 May;25(9):3682-9 PMID: 15831473
  62. Insulators are fundamental components of the eukaryotic genomes.
    Heredity (Edinb). 2005 Jun;94(6):571-6 PMID: 15815711
  63. Long-distance interactions between enhancers and promoters.
    FEBS J. 2005 Jul;272(13):3253-9 PMID: 15978032
  64. Handling three regulatory elements in one transgene: combined use of cre-lox, FLP-FRT, and I-Scel recombination systems.
    Biotechniques. 2005 Dec;39(6):871-6 PMID: 16382906
  65. Study of long-distance functional interactions between Su(Hw) insulators that can regulate enhancer-promoter communication in Drosophila melanogaster.
    Mol Cell Biol. 2006 Feb;26(3):754-61 PMID: 16428433
  66. The ABC of the BX-C: the bithorax complex explained.
    Development. 2006 Apr;133(8):1413-22 PMID: 16556913
  67. PRE-mediated bypass of two Su(Hw) insulators targets PcG proteins to a downstream promoter.
    Dev Cell. 2006 Jul;11(1):117-24 PMID: 16824958
Article Info
Journal
Genetics
Abbr.
Genetics
ISSN
0016-6731
Published
2007-09-00
Pages
113-21
Language
English
Region
United States
NLM ID
0374636
PMCID
PMC2013716
Subset
IM
Analysis Services
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