Abstract
We report the solvatochromic, viscosity-sensitive, and single-molecule photophysics of the fluorophores DCDHF-N-6 and DCDHF-A-6. These molecules are members of the dicyanomethylenedihydrofuran (DCDHF) class of single-molecule emitters that contain an amine electron donor and a DCDHF acceptor linked by a conjugated unit; DCDHF-N-6 and DCDHF-A-6 have naphthalene- and anthracene-conjugated linkers, respectively. These molecules maintain the beneficial photophysics of the phenylene-linked DCDHF (i.e., photostability, emission wavelength dependence on solvent polarity, and quantum yield sensitivity to solvent viscosity), yet offer absorption and emission at longer wavelengths that are more appropriate for cellular imaging. We demonstrate that these new fluorophores are less photolabile in an aqueous environment than several other commonly used dyes (rhodamine 6G, Texas Red, and fluorescein). Finally, we image single copies of the acene DCDHFs diffusing in the plasma membrane of living cells.
MeSH Terms
Anthracenes/chemistry
Cell Membrane/chemistry
Chemical Phenomena
Chemistry, Physical
Fluorescent Dyes/chemistry
Furans/chemistry
Molecular Structure
Naphthalenes/chemistry
Nitriles/chemistry
Photochemistry
Spectrum Analysis
Viscosity
Chemicals
Anthracenes
DCDHF-A-6
DCDHF-N-6
Fluorescent Dyes
Furans
Naphthalenes
Nitriles
dicyanomethylenedihydrofuran
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Lord Samuel J
Department of Chemistry, Stanford University, Stanford, California 94305-5080, USA.
Lu Zhikuan
Wang Hui
Willets Katherine A
Schuck P James
Lee Hsiao-lu D
Nishimura Stefanie Y
Twieg Robert J
Moerner W E
References (20)
20 references, click to expand
-
Single-molecule visualization in cell biology.
Nat Rev Mol Cell Biol. 2003 Sep;Suppl:SS1-5
PMID: 14587519
-
Nonlinear optical chromophores as nanoscale emitters for single-molecule spectroscopy.
Acc Chem Res. 2005 Jul;38(7):549-56
PMID: 16028889
-
Modifications of DCDHF single molecule fluorophores to impart water solubility.
Tetrahedron Lett. 2007 May 7;48(19):3471-3474
PMID: 19759848
-
A new photostable terrylene diimide dye for applications in single molecule studies and membrane labeling.
J Am Chem Soc. 2006 Apr 19;128(15):5283-91
PMID: 16608365
-
Studying biological tissue with fluorescence lifetime imaging: microscopy, endoscopy, and complex decay profiles.
Appl Opt. 2003 Jun 1;42(16):2995-3004
PMID: 12790450
-
Novel fluorophores for single-molecule imaging.
J Am Chem Soc. 2003 Feb 5;125(5):1174-5
PMID: 12553812
-
Fluorescent proteins as a toolkit for in vivo imaging.
Trends Biotechnol. 2005 Dec;23(12):605-13
PMID: 16269193
-
Autofluorescent proteins in single-molecule research: applications to live cell imaging microscopy.
Biophys J. 2001 May;80(5):2396-408
PMID: 11325739
-
Long-wavelength analogue of PRODAN: synthesis and properties of Anthradan, a fluorophore with a 2,6-donor-acceptor anthracene structure.
J Org Chem. 2006 Dec 22;71(26):9651-7
PMID: 17168582
-
Diffusion of lipid-like single-molecule fluorophores in the cell membrane.
J Phys Chem B. 2006 Apr 20;110(15):8151-7
PMID: 16610918
-
Single-molecule optoelectronics.
Acc Chem Res. 2005 Jul;38(7):534-41
PMID: 16028887
-
Properties of lipid microdomains in a muscle cell membrane visualized by single molecule microscopy.
EMBO J. 2000 Mar 1;19(5):892-901
PMID: 10698931
-
Branching out of single-molecule fluorescence spectroscopy: challenges for chemistry and influence on biology.
Angew Chem Int Ed Engl. 2005 Apr 29;44(18):2642-71
PMID: 15849689
-
Structural changes accompanying intramolecular electron transfer: focus on twisted intramolecular charge-transfer states and structures.
Chem Rev. 2003 Oct;103(10):3899-4032
PMID: 14531716
-
Potentials and pitfalls of fluorescent quantum dots for biological imaging.
Trends Cell Biol. 2004 Sep;14(9):497-504
PMID: 15350978
-
Visualizing infection of individual influenza viruses.
Proc Natl Acad Sci U S A. 2003 Aug 5;100(16):9280-5
PMID: 12883000
-
Solvent-sensitive dyes to report protein conformational changes in living cells.
J Am Chem Soc. 2003 Apr 9;125(14):4132-45
PMID: 12670235
-
Living cells as test tubes.
Science. 2006 Apr 14;312(5771):228-30
PMID: 16614211
-
Single molecules of the bacterial actin MreB undergo directed treadmilling motion in Caulobacter crescentus.
Proc Natl Acad Sci U S A. 2006 Jul 18;103(29):10929-34
PMID: 16829583
-
Translational diffusion of individual class II MHC membrane proteins in cells.
Biophys J. 2002 Nov;83(5):2681-92
PMID: 12414700