Abstract
Synthetic biological systems often require multiple, independently inducible promoters in order to control the expression levels of several genes; however, cross talk between the promoters limits this ability. Here, we demonstrate the directed evolution of AraC to construct an arabinose-inducible (P(BAD)) system that is more compatible with IPTG (isopropyl-beta-D-1-thiogalactopyranoside) induction of a lactose-inducible (P(lac)) system. The constructed system is 10 times more sensitive to arabinose and tolerates IPTG significantly better than the wild type. Detailed studies indicate that the AraC dimerization domain and C terminus are important for the increased sensitivity of AraC to arabinose.
MeSH Terms
AraC Transcription Factor/drug effects,genetics
Arabinose/metabolism,pharmacology
Escherichia coli/genetics,growth & development,metabolism
Escherichia coli Proteins/drug effects,genetics
Evolution, Molecular
Isopropyl Thiogalactoside/metabolism,pharmacology
Lactose/pharmacology
Mutagenesis, Site-Directed
Operon
Promoter Regions, Genetic/drug effects,physiology
Chemicals
AraC Transcription Factor
AraC protein, E coli
Escherichia coli Proteins
Isopropyl Thiogalactoside
Arabinose
Lactose
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Lee Sung Kuk
Department of Chemical Engineering, University of California, Berkeley, California 94720, USA.
Chou Howard H
Pfleger Brian F
Newman Jack D
Yoshikuni Yasuo
Keasling Jay D
References (33)
33 references, click to expand
-
A synthetic oscillatory network of transcriptional regulators.
Nature. 2000 Jan 20;403(6767):335-8
PMID: 10659856
-
Characterization of the Escherichia coli araFGH and araJ promoters.
J Mol Biol. 1990 Oct 20;215(4):497-510
PMID: 2231717
-
Biosynthesis of complex polyketides in a metabolically engineered strain of E. coli.
Science. 2001 Mar 2;291(5509):1790-2
PMID: 11230695
-
Mapping arm-DNA-binding domain interactions in AraC.
J Mol Biol. 2001 Apr 6;307(4):1001-9
PMID: 11286551
-
Genetic design for facilitated production and recovery of recombinant proteins in Escherichia coli.
Biotechnol Appl Biochem. 2002 Apr;35(Pt 2):91-105
PMID: 11916451
-
Combinatorial synthesis of genetic networks.
Science. 2002 May 24;296(5572):1466-70
PMID: 12029133
-
Directed evolution of a genetic circuit.
Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16587-91
PMID: 12451174
-
AraC protein: a love-hate relationship.
Bioessays. 2003 Mar;25(3):274-82
PMID: 12596232
-
The use of lac-type promoters in control analysis.
Eur J Biochem. 1993 Jan 15;211(1-2):181-91
PMID: 8425528
-
Functional domains of the AraC protein.
Proc Natl Acad Sci U S A. 1993 Jun 15;90(12):5638-42
PMID: 8516313
-
Reaching out. Locating and lengthening the interdomain linker in AraC protein.
J Mol Biol. 1994 Sep 30;242(4):330-8
PMID: 7932693
-
Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter.
J Bacteriol. 1995 Jul;177(14):4121-30
PMID: 7608087
-
Structural basis for ligand-regulated oligomerization of AraC.
Science. 1997 Apr 18;276(5311):421-5
PMID: 9103202
-
The 1.6 A crystal structure of the AraC sugar-binding and dimerization domain complexed with D-fucose.
J Mol Biol. 1997 Oct 17;273(1):226-37
PMID: 9367758
-
Prokaryotic promoters in biotechnology.
Biotechnol Annu Rev. 1995;1:105-28
PMID: 9704086
-
A novel DNA-binding motif in MarA: the first structure for an AraC family transcriptional activator.
Proc Natl Acad Sci U S A. 1998 Sep 1;95(18):10413-8
PMID: 9724717
-
Inducible expression of green fluorescent protein within channel catfish cells by a cecropin gene promoter.
Gene. 1998 Aug 17;216(1):207-13
PMID: 9766968
-
Monitoring GFP-operon fusion protein expression during high cell density cultivation of Escherichia coli using an on-line optical sensor.
Biotechnol Bioeng. 1999 Oct 5;65(1):54-64
PMID: 10440671
-
Recombinant protein expression in Escherichia coli.
Curr Opin Biotechnol. 1999 Oct;10(5):411-21
PMID: 10508629
-
Gene-expression tools for the metabolic engineering of bacteria.
Trends Biotechnol. 1999 Nov;17(11):452-60
PMID: 10511704
-
A synthetic multicellular system for programmed pattern formation.
Nature. 2005 Apr 28;434(7037):1130-4
PMID: 15858574
-
DNA looping and unlooping by AraC protein.
Science. 1990 Oct 26;250(4980):528-32
PMID: 2237403
-
Advances in synthetic biology: on the path from prototypes to applications.
Curr Opin Biotechnol. 2005 Aug;16(4):476-83
PMID: 16019200
-
A propionate-inducible expression system for enteric bacteria.
Appl Environ Microbiol. 2005 Nov;71(11):6856-62
PMID: 16269719
-
Environmentally controlled invasion of cancer cells by engineered bacteria.
J Mol Biol. 2006 Jan 27;355(4):619-27
PMID: 16330045
-
Production of the antimalarial drug precursor artemisinic acid in engineered yeast.
Nature. 2006 Apr 13;440(7086):940-3
PMID: 16612385
-
Dual selection enhances the signaling specificity of a variant of the quorum-sensing transcriptional activator LuxR.
Nat Biotechnol. 2006 Jun;24(6):708-12
PMID: 16715074
-
Genetic parts to program bacteria.
Curr Opin Biotechnol. 2006 Oct;17(5):548-57
PMID: 16978856
-
Programmed population control by cell-cell communication and regulated killing.
Nature. 2004 Apr 22;428(6985):868-71
PMID: 15064770
-
Spatiotemporal control of gene expression with pulse-generating networks.
Proc Natl Acad Sci U S A. 2004 Apr 27;101(17):6355-60
PMID: 15096621
-
The DNA loop model for ara repression: AraC protein occupies the proposed loop sites in vivo and repression-negative mutations lie in these same sites.
Proc Natl Acad Sci U S A. 1986 Jun;83(11):3654-8
PMID: 3520549
-
Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes.
J Mol Biol. 1986 May 5;189(1):113-30
PMID: 3537305
-
Stabilizing C-terminal tails on AraC.
Proteins. 2001 Feb 1;42(2):177-81
PMID: 11119641