-
Relating three-dimensional structures to protein networks provides evolutionary insights.
Science. 2006 Dec 22;314(5807):1938-41
PMID: 17185604
-
Interplay of TBP inhibitors in global transcriptional control.
Mol Cell. 2002 Oct;10(4):871-82
PMID: 12419230
-
Chromosomal landscape of nucleosome-dependent gene expression and silencing in yeast.
Nature. 1999 Nov 25;402(6760):418-21
PMID: 10586882
-
Signaling and circuitry of multiple MAPK pathways revealed by a matrix of global gene expression profiles.
Science. 2000 Feb 4;287(5454):873-80
PMID: 10657304
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae.
Nature. 2000 Feb 10;403(6770):623-7
PMID: 10688190
-
Functional and genomic analyses reveal an essential coordination between the unfolded protein response and ER-associated degradation.
Cell. 2000 Apr 28;101(3):249-58
PMID: 10847680
-
Genomic expression programs in the response of yeast cells to environmental changes.
Mol Biol Cell. 2000 Dec;11(12):4241-57
PMID: 11102521
-
New components of a system for phosphate accumulation and polyphosphate metabolism in Saccharomyces cerevisiae revealed by genomic expression analysis.
Mol Biol Cell. 2000 Dec;11(12):4309-21
PMID: 11102525
-
A comprehensive two-hybrid analysis to explore the yeast protein interactome.
Proc Natl Acad Sci U S A. 2001 Apr 10;98(8):4569-74
PMID: 11283351
-
Genomic expression responses to DNA-damaging agents and the regulatory role of the yeast ATR homolog Mec1p.
Mol Biol Cell. 2001 Oct;12(10):2987-3003
PMID: 11598186
-
MIPS: a database for genomes and protein sequences.
Nucleic Acids Res. 2002 Jan 1;30(1):31-4
PMID: 11752246
-
Functional organization of the yeast proteome by systematic analysis of protein complexes.
Nature. 2002 Jan 10;415(6868):141-7
PMID: 11805826
-
Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.
Nature. 2002 Jan 10;415(6868):180-3
PMID: 11805837
-
Evolutionary rate in the protein interaction network.
Science. 2002 Apr 26;296(5568):750-2
PMID: 11976460
-
Transcriptome profiling to identify genes involved in peroxisome assembly and function.
J Cell Biol. 2002 Jul 22;158(2):259-71
PMID: 12135984
-
90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors.
Mol Cell. 2002 Jul;10(1):105-15
PMID: 12150911
-
Genome-wide analysis of gene expression regulated by the calcineurin/Crz1p signaling pathway in Saccharomyces cerevisiae.
J Biol Chem. 2002 Aug 23;277(34):31079-88
PMID: 12058033
-
Stratus not altocumulus: a new view of the yeast protein interaction network.
PLoS Biol. 2006 Oct;4(10):e317
PMID: 16984220
-
Arrest, adaptation, and recovery following a chromosome double-strand break in Saccharomyces cerevisiae.
Cold Spring Harb Symp Quant Biol. 2000;65:303-14
PMID: 12760044
-
Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.
Nat Genet. 2003 Jun;34(2):166-76
PMID: 12740579
-
High-definition macromolecular composition of yeast RNA-processing complexes.
Mol Cell. 2004 Jan 30;13(2):225-39
PMID: 14759368
-
Evidence for dynamically organized modularity in the yeast protein-protein interaction network.
Nature. 2004 Jul 1;430(6995):88-93
PMID: 15190252
-
Exploration of essential gene functions via titratable promoter alleles.
Cell. 2004 Jul 9;118(1):31-44
PMID: 15242642
-
The transcriptional program of sporulation in budding yeast.
Science. 1998 Oct 23;282(5389):699-705
PMID: 9784122
-
Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization.
Mol Biol Cell. 1998 Dec;9(12):3273-97
PMID: 9843569
-
Finding new components of the target of rapamycin (TOR) signaling network through chemical genetics and proteome chips.
Proc Natl Acad Sci U S A. 2004 Nov 23;101(47):16594-9
PMID: 15539461
-
Adjusting for selection on synonymous sites in estimates of evolutionary distance.
Mol Biol Evol. 2005 Jan;22(1):174-7
PMID: 15371530
-
Integrating phenotypic and expression profiles to map arsenic-response networks.
Genome Biol. 2004;5(12):R95
PMID: 15575969
-
Effect of sampling on topology predictions of protein-protein interaction networks.
Nat Biotechnol. 2005 Jul;23(7):839-44
PMID: 16003372
-
Proteome survey reveals modularity of the yeast cell machinery.
Nature. 2006 Mar 30;440(7084):631-6
PMID: 16429126
-
Global landscape of protein complexes in the yeast Saccharomyces cerevisiae.
Nature. 2006 Mar 30;440(7084):637-43
PMID: 16554755
-
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise.
Nature. 2006 Jun 15;441(7095):840-6
PMID: 16699522
-
Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.
J Biol. 2006;5(4):11
PMID: 16762047
-
Transcriptome profiling of Saccharomyces cerevisiae during a transition from fermentative to glycerol-based respiratory growth reveals extensive metabolic and structural remodeling.
Mol Genet Genomics. 2006 Aug;276(2):170-86
PMID: 16741729
-
Metabolic-state-dependent remodeling of the transcriptome in response to anoxia and subsequent reoxygenation in Saccharomyces cerevisiae.
Eukaryot Cell. 2006 Sep;5(9):1468-89
PMID: 16963631