Home LiteratureArticle Details

PMID: 17553858 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, Non-P.H.S.

The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.

Bioinformatics (Oxford, England) ·Vol. 23 ·No. 16 ·2007-08-15 ·Pages 2193-5

Salwinski L, Eisenberg D

Abstract

The MiSink Plugin converts Cytoscape, an open-source bioinformatics platform for network visualization, to a graphical interface for the database of interacting proteins (DIP: http://dip.doe-mbi.ucla.edu). Seamless integration is possible by providing bi-directional communication between Cytoscape and any Web site supplying data in XML or tab-delimited format. MiSink is freely available for download at http://dip.doe-mbi.ucla.edu/Software.cgi.

MeSH Terms

Computer Graphics Database Management Systems Databases, Protein Information Storage and Retrieval/methods Protein Interaction Mapping/methods Software User-Computer Interface

Authors & Affiliations

2 authors, click to expand affiliations / ORCID

Salwinski Lukasz

UCLA-DOE Institute for Genomics & Proteomics, Department of Chemistry, Howard Hughes Medical Institute, Box 951570, UCLA, Los Angeles, CA 90095, USA. lukasz@mbi.ucla.edu

Eisenberg David

Article Info

Journal

Bioinformatics (Oxford, England)

Abbr.

Bioinformatics

ISSN

1367-4811

DOI

10.1093/bioinformatics/btm304

lukasz@mbi.ucla.edu

Published

2007-08-15

Epub

2007-00-06

Pages

2193-5

Language

English

Region

England

NLM ID

9808944

Subset

Grants

NIGMS NIH HHS · 1 R01 GM071909 · United States

External Links

PubMed source DOI: 10.1093/bioinformatics/btm304 View journal details

Analysis Services

The MiSink Plugin: Cytoscape as a graphical interface to the Database of Interacting Proteins.

Contact

WeChat Official Account