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PMID: 17526751 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Structure and function of a mitochondrial late embryogenesis abundant protein are revealed by desiccation.

The Plant cell ·Vol. 19 ·No. 5 ·2007-05-00 ·Pages 1580-9

Tolleter D, Jaquinod M, Mangavel C, Passirani C, Saulnier P, Manon S, Teyssier E, Payet N, Avelange-Macherel MH, Macherel D

Abstract

Few organisms are able to withstand desiccation stress; however, desiccation tolerance is widespread among plant seeds. Survival without water relies on an array of mechanisms, including the accumulation of stress proteins such as the late embryogenesis abundant (LEA) proteins. These hydrophilic proteins are prominent in plant seeds but also found in desiccation-tolerant organisms. In spite of many theories and observations, LEA protein function remains unclear. Here, we show that LEAM, a mitochondrial LEA protein expressed in seeds, is a natively unfolded protein, which reversibly folds into alpha-helices upon desiccation. Structural modeling revealed an analogy with class A amphipathic helices of apolipoproteins that coat low-density lipoprotein particles in mammals. LEAM appears spontaneously modified by deamidation and oxidation of several residues that contribute to its structural features. LEAM interacts with membranes in the dry state and protects liposomes subjected to drying. The overall results provide strong evidence that LEAM protects the inner mitochondrial membrane during desiccation. According to sequence analyses of several homologous proteins from various desiccation-tolerant organisms, a similar protection mechanism likely acts with other types of cellular membranes.

MeSH Terms
Amino Acid Sequence Arabidopsis/genetics Circular Dichroism Desiccation Liposomes/metabolism Mitochondrial Proteins/chemistry,metabolism Models, Molecular Molecular Sequence Data Peas/chemistry Phospholipids/metabolism Plant Proteins/chemistry,metabolism Plants, Genetically Modified Protein Folding Protein Structure, Secondary Spectroscopy, Fourier Transform Infrared Structure-Activity Relationship
Chemicals
Liposomes Mitochondrial Proteins Phospholipids Plant Proteins late embryogenesis abundant protein, plant
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Tolleter Dimitri
Unité Mixte de Recherche 1191, Physiologie Moléculaire des Semences, Université d'Angers/Institut National d'Horticulture/Institut National de la Recherche Agronomique, Angers F-49045, France.
Jaquinod Michel
Mangavel Cécile
Passirani Catherine
Saulnier Patrick
Manon Stephen
Teyssier Emeline
Payet Nicole
Avelange-Macherel Marie-Hélène
Macherel David
References (46)
46 references, click to expand
  1. Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm.
    J Mol Biol. 1999 Oct 22;293(2):321-31 PMID: 10550212
  2. Identification of plant cytoskeleton-interacting proteins by screening for actin stress fiber association in mammalian fibroblasts.
    Plant J. 2006 Nov;48(3):367-79 PMID: 17010111
  3. Highly hydrophilic proteins in prokaryotes and eukaryotes are common during conditions of water deficit.
    J Biol Chem. 2000 Feb 25;275(8):5668-74 PMID: 10681550
  4. Why are "natively unfolded" proteins unstructured under physiologic conditions?
    Proteins. 2000 Nov 15;41(3):415-27 PMID: 11025552
  5. Sequence complexity of disordered protein.
    Proteins. 2001 Jan 1;42(1):38-48 PMID: 11093259
  6. Estimation of protein secondary structure from circular dichroism spectra: comparison of CONTIN, SELCON, and CDSSTR methods with an expanded reference set.
    Anal Biochem. 2000 Dec 15;287(2):252-60 PMID: 11112271
  7. Isolation and characterization of a D-7 LEA protein from pollen that stabilizes glasses in vitro.
    Biochim Biophys Acta. 2001 Jan 12;1544(1-2):196-206 PMID: 11341929
  8. Intrinsically disordered protein.
    J Mol Graph Model. 2001;19(1):26-59 PMID: 11381529
  9. How membranes shape protein structure.
    J Biol Chem. 2001 Aug 31;276(35):32395-8 PMID: 11432876
  10. Amphipathic alpha helical antimicrobial peptides.
    Eur J Biochem. 2001 Nov;268(21):5589-600 PMID: 11683882
  11. DICHROWEB: an interactive website for the analysis of protein secondary structure from circular dichroism spectra.
    Bioinformatics. 2002 Jan;18(1):211-2 PMID: 11836237
  12. Inactivation of two homologues of proteins presumed to be involved in the desiccation tolerance of plants sensitizes Deinococcus radiodurans R1 to desiccation.
    Cryobiology. 2001 Sep;43(2):133-9 PMID: 11846468
  13. Anhydrobiosis: plant desiccation gene found in a nematode.
    Nature. 2002 Mar 7;416(6876):38 PMID: 11882885
  14. Temperature-induced extended helix/random coil transitions in a group 1 late embryogenesis-abundant protein from soybean.
    Plant Physiol. 2002 Mar;128(3):822-32 PMID: 11891239
  15. Protein deamidation.
    Proc Natl Acad Sci U S A. 2002 Apr 16;99(8):5283-8 PMID: 11959979
  16. A survey of the plant mitochondrial proteome in relation to development.
    Proteomics. 2002 Jul;2(7):880-98 PMID: 12124934
  17. The binding of maize DHN1 to lipid vesicles. Gain of structure and lipid specificity.
    Plant Physiol. 2003 Jan;131(1):309-16 PMID: 12529538
  18. Transition from natively unfolded to folded state induced by desiccation in an anhydrobiotic nematode protein.
    J Biol Chem. 2003 Apr 11;278(15):12977-84 PMID: 12569097
  19. Oxidative post-translational modification of tryptophan residues in cardiac mitochondrial proteins.
    J Biol Chem. 2003 May 30;278(22):19587-90 PMID: 12679331
  20. Deamidation and isoaspartate formation in proteins: unwanted alterations or surreptitious signals?
    Cell Mol Life Sci. 2003 Jul;60(7):1281-95 PMID: 12943218
  21. POPP the question: what do LEA proteins do?
    Trends Plant Sci. 2004 Jan;9(1):13-7 PMID: 14729214
  22. Analysis of an activated ABI5 allele using a new selection method for transgenic Arabidopsis seeds.
    FEBS Lett. 2004 Mar 12;561(1-3):127-31 PMID: 15013763
  23. Alpha-synuclein has a high affinity for packing defects in a bilayer membrane: a thermodynamics study.
    J Biol Chem. 2004 May 21;279(21):21966-75 PMID: 15028717
  24. Preparation of yeast mitochondria (Saccharomyces cerevisiae) with good P/O and respiratory control ratios.
    Methods Enzymol. 1979;55:149-59 PMID: 379498
  25. Examination of the secondary structure of proteins by deconvolved FTIR spectra.
    Biopolymers. 1986 Mar;25(3):469-87 PMID: 3697478
  26. Amphipathic helix motif: classes and properties.
    Proteins. 1990;8(2):103-17 PMID: 2235991
  27. The amphipathic helix in the exchangeable apolipoproteins: a review of secondary structure and function.
    J Lipid Res. 1992 Feb;33(2):141-66 PMID: 1569369
  28. Interactions of synthetic peptide analogs of the class A amphipathic helix with lipids. Evidence for the snorkel hypothesis.
    J Biol Chem. 1994 Mar 11;269(10):7185-91 PMID: 8125930
  29. Immunolocalization of freezing-tolerance-associated proteins in the cytoplasm and nucleoplasm of wheat crown tissues.
    Plant J. 1995 Oct;8(4):583-93 PMID: 7496403
  30. The recombinant dehydrin-like desiccation stress protein from the resurrection plant Craterostigma plantagineum displays no defined three-dimensional structure in its native state.
    Biol Chem. 1996 Sep;377(9):555-61 PMID: 9067253
  31. Deficiency of a protein-repair enzyme results in the accumulation of altered proteins, retardation of growth, and fatal seizures in mice.
    Proc Natl Acad Sci U S A. 1997 Jun 10;94(12):6132-7 PMID: 9177182
  32. Protein repair L-isoaspartyl methyltransferase in plants. Phylogenetic distribution and the accumulation of substrate proteins in aged barley seeds.
    Plant Physiol. 1997 Dec;115(4):1481-9 PMID: 9414558
  33. Deficiency in protein L-isoaspartyl methyltransferase results in a fatal progressive epilepsy.
    J Neurosci. 1998 Mar 15;18(6):2063-74 PMID: 9482793
  34. SWISS-MODEL and the Swiss-PdbViewer: an environment for comparative protein modeling.
    Electrophoresis. 1997 Dec;18(15):2714-23 PMID: 9504803
  35. The role of vitrification in anhydrobiosis.
    Annu Rev Physiol. 1998;60:73-103 PMID: 9558455
  36. Role of water in plasticity, stability, and action of proteins: the crystal structures of lysozyme at very low levels of hydration.
    Proteins. 1998 Aug 1;32(2):229-40 PMID: 9714162
  37. WinGene/WinPep: user-friendly software for the analysis of amino acid sequences.
    Biotechniques. 1999 Jun;26(6):1170-2 PMID: 10376156
  38. An amphipathic alpha-helix at a membrane interface: a structural study using a novel X-ray diffraction method.
    J Mol Biol. 1999 Jul 2;290(1):99-117 PMID: 10388560
  39. FTIR-Spectroscopy of multistranded coiled coil proteins.
    Biochemistry. 1999 Sep 28;38(39):12727-34 PMID: 10504243
  40. Identification in pea seed mitochondria of a late-embryogenesis abundant protein able to protect enzymes from drying.
    Plant Physiol. 2005 Jan;137(1):157-67 PMID: 15618423
  41. Gene cloning and characterization of a soybean (Glycine max L.) LEA protein, GmPM16.
    Plant Mol Biol. 2004 Nov;56(5):689-703 PMID: 15803408
  42. LEA proteins prevent protein aggregation due to water stress.
    Biochem J. 2005 May 15;388(Pt 1):151-7 PMID: 15631617
  43. Protein oxidation in plant mitochondria detected as oxidized tryptophan.
    Free Radic Biol Med. 2006 Feb 1;40(3):430-5 PMID: 16443157
  44. Structural investigation of disordered stress proteins. Comparison of full-length dehydrins with isolated peptides of their conserved segments.
    Plant Physiol. 2006 Jun;141(2):638-50 PMID: 16565295
  45. Protein-water and protein-buffer interactions in the aqueous solution of an intrinsically unstructured plant dehydrin: NMR intensity and DSC aspects.
    Biophys J. 2006 Sep 15;91(6):2243-9 PMID: 16798808
  46. The effects of alpha-helix on the stability of Asn residues: deamidation rates in peptides of varying helicity.
    Protein Sci. 1999 Nov;8(11):2519-23 PMID: 10595558
Article Info
Journal
The Plant cell
Abbr.
Plant Cell
ISSN
1040-4651
Published
2007-05-00
Epub
2007-00-25
Pages
1580-9
Language
English
Region
England
NLM ID
9208688
PMCID
PMC1913742
Subset
IM
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