Home LiteratureArticle Details
PMID: 17406412 Published · ppublish English Journal Article

Design and implementation of bimolecular fluorescence complementation (BiFC) assays for the visualization of protein interactions in living cells.

Nature protocols ·Vol. 1 ·No. 3 ·2006-00-00 ·Pages 1278-86

Kerppola TK

Abstract

Bimolecular fluorescence complementation (BiFC) analysis enables direct visualization of protein interactions in living cells. The BiFC assay is based on the discoveries that two non-fluorescent fragments of a fluorescent protein can form a fluorescent complex and that the association of the fragments can be facilitated when they are fused to two proteins that interact with each other. BiFC must be confirmed by parallel analysis of proteins in which the interaction interface has been mutated. It is not necessary for the interaction partners to juxtapose the fragments within a specific distance of each other because they can associate when they are tethered to a complex with flexible linkers. It is also not necessary for the interaction partners to form a complex with a long half-life or a high occupancy since the fragments can associate in a transient complex and un-associated fusion proteins do not interfere with detection of the complex. Many interactions can be visualized when the fusion proteins are expressed at levels comparable to their endogenous counterparts. The BiFC assay has been used for the visualization of interactions between many types of proteins in different subcellular locations and in different cell types and organisms. It is technically straightforward and can be performed using a regular fluorescence microscope and standard molecular biology and cell culture reagents.

MeSH Terms
Fluorescent Dyes/metabolism Genetic Complementation Test/methods Microscopy, Fluorescence Multiprotein Complexes/analysis,metabolism Spectrometry, Fluorescence/methods
Chemicals
Fluorescent Dyes Multiprotein Complexes
Authors & Affiliations
1 authors, click to expand affiliations / ORCID
Kerppola Tom K
Howard Hughes Medical Institute and Department of Biological Chemistry, University of Michigan Medical School, Ann Arbor, Michigan 48109, USA. kerppola@umich.edu
References (68)
68 references, click to expand
  1. AtSufE is an essential activator of plastidic and mitochondrial desulfurases in Arabidopsis.
    EMBO J. 2006 Feb 22;25(4):900-9 PMID: 16437155
  2. Mutual regulation of c-Jun and ATF2 by transcriptional activation and subcellular localization.
    EMBO J. 2006 Mar 8;25(5):1058-69 PMID: 16511568
  3. Visualization of APP dimerization and APP-Notch2 heterodimerization in living cells using bimolecular fluorescence complementation.
    J Neurochem. 2006 Apr;97(1):30-43 PMID: 16515557
  4. Assessment of the integral membrane protein topology in living cells.
    Plant J. 2006 Apr;46(1):145-54 PMID: 16553902
  5. Arabidopsis GLUTAMINE-RICH PROTEIN23 is essential for early embryogenesis and encodes a novel nuclear PPR motif protein that interacts with RNA polymerase II subunit III.
    Plant Cell. 2006 Apr;18(4):815-30 PMID: 16489121
  6. TRAF6 activation of PI 3-kinase-dependent cytoskeletal changes is cooperative with Ras and is mediated by an interaction with cytoplasmic Src.
    J Cell Sci. 2006 Apr 15;119(Pt 8):1579-91 PMID: 16569657
  7. Identifying off-target effects and hidden phenotypes of drugs in human cells.
    Nat Chem Biol. 2006 Jun;2(6):329-37 PMID: 16680159
  8. Visualization of molecular interactions by fluorescence complementation.
    Nat Rev Mol Cell Biol. 2006 Jun;7(6):449-56 PMID: 16625152
  9. A variant of yellow fluorescent protein with fast and efficient maturation for cell-biological applications.
    Nat Biotechnol. 2002 Jan;20(1):87-90 PMID: 11753368
  10. Visualization of interactions among bZIP and Rel family proteins in living cells using bimolecular fluorescence complementation.
    Mol Cell. 2002 Apr;9(4):789-98 PMID: 11983170
  11. Creating new fluorescent probes for cell biology.
    Nat Rev Mol Cell Biol. 2002 Dec;3(12):906-18 PMID: 12461557
  12. Simultaneous visualization of multiple protein interactions in living cells using multicolor fluorescence complementation analysis.
    Nat Biotechnol. 2003 May;21(5):539-45 PMID: 12692560
  13. The F-box protein Skp2 participates in c-Myc proteosomal degradation and acts as a cofactor for c-Myc-regulated transcription.
    Mol Cell. 2003 May;11(5):1189-200 PMID: 12769844
  14. DNA sequence-enabled reassembly of the green fluorescent protein.
    J Am Chem Soc. 2005 Aug 10;127(31):10782-3 PMID: 16076155
  15. FD, a bZIP protein mediating signals from the floral pathway integrator FT at the shoot apex.
    Science. 2005 Aug 12;309(5737):1052-6 PMID: 16099979
  16. The bromodomain protein Brd4 is a positive regulatory component of P-TEFb and stimulates RNA polymerase II-dependent transcription.
    Mol Cell. 2005 Aug 19;19(4):523-34 PMID: 16109376
  17. Bimolecular fluorescence complementation analysis of cytochrome p450 2c2, 2e1, and NADPH-cytochrome p450 reductase molecular interactions in living cells.
    Drug Metab Dispos. 2005 Sep;33(9):1382-90 PMID: 15980100
  18. Plastid division is mediated by combinatorial assembly of plastid division proteins.
    Plant J. 2005 Sep;43(6):811-23 PMID: 16146521
  19. Agrobacterium tumefaciens oncogenic suppressors inhibit T-DNA and VirE2 protein substrate binding to the VirD4 coupling protein.
    Mol Microbiol. 2005 Oct;58(2):565-79 PMID: 16194240
  20. Partner-regulated interaction of IFN regulatory factor 8 with chromatin visualized in live macrophages.
    Proc Natl Acad Sci U S A. 2005 Oct 4;102(40):14368-73 PMID: 16183743
  21. Monitoring protein-protein interactions in intact eukaryotic cells by beta-galactosidase complementation.
    Proc Natl Acad Sci U S A. 1997 Aug 5;94(16):8405-10 PMID: 9237989
  22. Loss of Bif-1 suppresses Bax/Bak conformational change and mitochondrial apoptosis.
    Mol Cell Biol. 2005 Nov;25(21):9369-82 PMID: 16227588
  23. The Aspergillus nidulans phytochrome FphA represses sexual development in red light.
    Curr Biol. 2005 Oct 25;15(20):1833-8 PMID: 16243030
  24. Dimerization of the cytokine receptors gp130 and LIFR analysed in single cells.
    J Cell Sci. 2005 Nov 1;118(Pt 21):5129-40 PMID: 16254248
  25. LIP19, a basic region leucine zipper protein, is a Fos-like molecular switch in the cold signaling of rice plants.
    Plant Cell Physiol. 2005 Oct;46(10):1623-34 PMID: 16051676
  26. In planta analysis of protein-protein interactions related to light signaling by bimolecular fluorescence complementation.
    Protoplasma. 2005 Dec;226(3-4):137-46 PMID: 16333572
  27. Functional analysis of EID1, an F-box protein involved in phytochrome A-dependent light signal transduction.
    Plant J. 2006 Feb;45(3):423-38 PMID: 16412087
  28. In vivo BiFC analysis of Y14 and NXF1 mRNA export complexes: preferential localization within and around SC35 domains.
    J Cell Biol. 2006 Jan 30;172(3):373-81 PMID: 16431928
  29. Identification of new fluorescent protein fragments for bimolecular fluorescence complementation analysis under physiological conditions.
    Biotechniques. 2006 Jan;40(1):61-6 PMID: 16454041
  30. F-box-like domain in the polerovirus protein P0 is required for silencing suppressor function.
    Proc Natl Acad Sci U S A. 2006 Feb 7;103(6):1994-9 PMID: 16446454
  31. BAP31 is involved in the retention of cytochrome P450 2C2 in the endoplasmic reticulum.
    J Biol Chem. 2006 Feb 17;281(7):4142-8 PMID: 16332681
  32. Fast complementation of split fluorescent protein triggered by DNA hybridization.
    Proc Natl Acad Sci U S A. 2006 Feb 14;103(7):2052-6 PMID: 16461889
  33. Phosphorylation of BATF regulates DNA binding: a novel mechanism for AP-1 (activator protein-1) regulation.
    Biochem J. 2003 Sep 1;374(Pt 2):423-31 PMID: 12809553
  34. VirE2, a type IV secretion substrate, interacts with the VirD4 transfer protein at cell poles of Agrobacterium tumefaciens.
    Mol Microbiol. 2003 Sep;49(6):1699-713 PMID: 12950931
  35. Mechanisms of proinflammatory cytokine-induced biphasic NF-kappaB activation.
    Mol Cell. 2003 Nov;12(5):1287-300 PMID: 14636585
  36. Selective recognition of acetylated histones by bromodomain proteins visualized in living cells.
    Mol Cell. 2004 Jan 16;13(1):33-43 PMID: 14731392
  37. Regulation of apoptosis by the Ft1 protein, a new modulator of protein kinase B/Akt.
    Mol Cell Biol. 2004 Feb;24(4):1493-504 PMID: 14749367
  38. Heterodimeric interactions among the 1-amino-cyclopropane-1-carboxylate synthase polypeptides encoded by the Arabidopsis gene family.
    Proc Natl Acad Sci U S A. 2004 Feb 24;101(8):2275-80 PMID: 14983000
  39. Inhibition of Mist1 homodimer formation induces pancreatic acinar-to-ductal metaplasia.
    Mol Cell Biol. 2004 Apr;24(7):2673-81 PMID: 15024058
  40. PKB/Akt modulates TGF-beta signalling through a direct interaction with Smad3.
    Nat Cell Biol. 2004 Apr;6(4):358-65 PMID: 15048128
  41. Visualization of Myc/Max/Mad family dimers and the competition for dimerization in living cells.
    Mol Cell Biol. 2004 May;24(10):4294-308 PMID: 15121849
  42. Proximal, selective, and dynamic interactions between integrin alphaIIbbeta3 and protein tyrosine kinases in living cells.
    J Cell Biol. 2004 May 10;165(3):305-11 PMID: 15123737
  43. Synergistic transcription activation by Maf and Sox and their subnuclear localization are disrupted by a mutation in Maf that causes cataract.
    Mol Cell Biol. 2004 Jul;24(13):5694-709 PMID: 15199128
  44. Visualization of G protein betagamma dimers using bimolecular fluorescence complementation demonstrates roles for both beta and gamma in subcellular targeting.
    J Biol Chem. 2004 Jul 16;279(29):30279-86 PMID: 15136579
  45. Visualization of RNA-protein interactions in living cells: FMRP and IMP1 interact on mRNAs.
    EMBO J. 2004 Aug 18;23(16):3346-55 PMID: 15282548
  46. Involvement of targeted proteolysis in plant genetic transformation by Agrobacterium.
    Nature. 2004 Sep 2;431(7004):87-92 PMID: 15343337
  47. Bromodomain protein Brd4 binds to GTPase-activating SPA-1, modulating its activity and subcellular localization.
    Mol Cell Biol. 2004 Oct;24(20):9059-69 PMID: 15456879
  48. Detection of protein-protein interactions in plants using bimolecular fluorescence complementation.
    Plant J. 2004 Nov;40(3):419-27 PMID: 15469499
  49. Visualization of protein interactions in living plant cells using bimolecular fluorescence complementation.
    Plant J. 2004 Nov;40(3):428-38 PMID: 15469500
  50. Live cell imaging of Gs and the beta2-adrenergic receptor demonstrates that both alphas and beta1gamma7 internalize upon stimulation and exhibit similar trafficking patterns that differ from that of the beta2-adrenergic receptor.
    J Biol Chem. 2004 Oct 15;279(42):44101-12 PMID: 15297467
  51. Ubiquitin-mediated fluorescence complementation reveals that Jun ubiquitinated by Itch/AIP4 is localized to lysosomes.
    Proc Natl Acad Sci U S A. 2004 Oct 12;101(41):14782-7 PMID: 15469925
  52. Quantitation of membrane receptor distributions by image correlation spectroscopy: concept and application.
    Biophys J. 1993 Sep;65(3):1135-46 PMID: 8241393
  53. Split ubiquitin as a sensor of protein interactions in vivo.
    Proc Natl Acad Sci U S A. 1994 Oct 25;91(22):10340-4 PMID: 7937952
  54. Fluorescence correlation microscopy (FCM)-fluorescence correlation spectroscopy (FCS) taken into the cell.
    Cell Mol Biol (Noisy-le-grand). 1998 Jul;44(5):847-56 PMID: 9764751
  55. Oligomerization domain-directed reassembly of active dihydrofolate reductase from rationally designed fragments.
    Proc Natl Acad Sci U S A. 1998 Oct 13;95(21):12141-6 PMID: 9770453
  56. Oligomerization is required for HIV-1 Nef-induced activation of the Src family protein-tyrosine kinase, Hck.
    Biochemistry. 2004 Dec 21;43(50):15775-84 PMID: 15595833
  57. Detecting protein-protein interactions with a green fluorescent protein fragment reassembly trap: scope and mechanism.
    J Am Chem Soc. 2005 Jan 12;127(1):146-57 PMID: 15631464
  58. Phospholipase Cbeta2 binds to and inhibits phospholipase Cdelta1.
    J Biol Chem. 2005 Jan 14;280(2):1438-47 PMID: 15509571
  59. The VirE3 protein of Agrobacterium mimics a host cell function required for plant genetic transformation.
    EMBO J. 2005 Jan 26;24(2):428-37 PMID: 15616576
  60. Use of bimolecular fluorescence complementation to demonstrate transcription factor interaction in nuclei of living cells from the filamentous fungus Acremonium chrysogenum.
    Curr Genet. 2005 Feb;47(2):132-8 PMID: 15688253
  61. Dynamics of GBF1, a Brefeldin A-sensitive Arf1 exchange factor at the Golgi.
    Mol Biol Cell. 2005 Mar;16(3):1213-22 PMID: 15616190
  62. A central role of Arabidopsis thaliana ovate family proteins in networking and subcellular localization of 3-aa loop extension homeodomain proteins.
    Proc Natl Acad Sci U S A. 2005 Mar 29;102(13):4908-12 PMID: 15781858
  63. Uncoupling of the functions of the Arabidopsis VIP1 protein in transient and stable plant genetic transformation by Agrobacterium.
    Proc Natl Acad Sci U S A. 2005 Apr 19;102(16):5733-8 PMID: 15824315
  64. Capturing protein interactions in the secretory pathway of living cells.
    Proc Natl Acad Sci U S A. 2005 May 3;102(18):6350-5 PMID: 15849265
  65. Two-hybrid fluorescence cross-correlation spectroscopy detects protein-protein interactions in vivo.
    Chemphyschem. 2005 May;6(5):984-90 PMID: 15884086
  66. Degradation of Hof1 by SCF(Grr1) is important for actomyosin contraction during cytokinesis in yeast.
    EMBO J. 2005 Apr 6;24(7):1440-52 PMID: 15775961
  67. The DOF protein, SAD, interacts with GAMYB in plant nuclei and activates transcription of endosperm-specific genes during barley seed development.
    Plant J. 2005 Jun;42(5):652-62 PMID: 15918880
  68. The plant VirE2 interacting protein 1. a molecular link between the Agrobacterium T-complex and the host cell chromatin?
    Plant Physiol. 2005 Jul;138(3):1318-21 PMID: 16010006
Article Info
Journal
Nature protocols
Abbr.
Nat Protoc
ISSN
1750-2799
Published
2006-00-00
Pages
1278-86
Language
English
Region
England
NLM ID
101284307
PMCID
PMC2518326
Subset
IM
Grants
Howard Hughes Medical Institute · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com