Home LiteratureArticle Details
PMID: 17173864 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Crystal structure of the Nod1 caspase activation and recruitment domain.

Biochemical and biophysical research communications ·Vol. 353 ·No. 1 ·2007-02-02 ·Pages 1-5

Coussens NP, Mowers JC, McDonald C, Nuñez G, Ramaswamy S

Abstract

Nod-like receptors (NLRs), Nod1 and Nod2 are cytosolic detectors of pathogen-associated molecular patterns (PAMPs). Nod1 is a three-domain protein, consisting of a caspase activation and recruitment domain (CARD), a nucleotide-binding oligomerization domain (NOD), and a leucine-rich repeat domain (LRR). The binding of PAMPs to the LRR results in the activation of signaling through homophilic CARD-CARD interactions. Several CARD structures have been determined, including a recent NMR structure of Nod1 CARD. In contrast to the reported NMR structure, the crystal structure reported here is a dimer, where the sixth helix is swapped between two monomers. While the overall structure is very similar to the known CARD structures, this is the first report of a homodimeric CARD structure. The ability of the CARD to exist in monomeric and dimeric forms suggests another level of regulation in the activation of NLR proteins.

MeSH Terms
Binding Sites Caspases/chemistry,ultrastructure Crystallography Enzyme Activation Leucine/chemistry Models, Chemical Models, Molecular Nod1 Signaling Adaptor Protein/chemistry,ultrastructure Protein Binding Protein Conformation Protein Structure, Tertiary
Chemicals
NOD1 protein, human Nod1 Signaling Adaptor Protein Caspases Leucine
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Coussens Nathan P
Department of Biochemistry, Roy J. and Lucille A. Carver College of Medicine, The University of Iowa, Iowa City, IA, USA.
Mowers Jonathan C
McDonald Christine
Nuñez Gabriel
Ramaswamy S
References (25)
25 references, click to expand
  1. WHAT IF: a molecular modeling and drug design program.
    J Mol Graph. 1990 Mar;8(1):52-6, 29 PMID: 2268628
  2. Solution structure of the RAIDD CARD and model for CARD/CARD interaction in caspase-2 and caspase-9 recruitment.
    Cell. 1998 Jul 24;94(2):171-80 PMID: 9695946
  3. Structure of the apoptotic protease-activating factor 1 bound to ADP.
    Nature. 2005 Apr 14;434(7035):926-33 PMID: 15829969
  4. Nod1 detects a unique muropeptide from gram-negative bacterial peptidoglycan.
    Science. 2003 Jun 6;300(5625):1584-7 PMID: 12791997
  5. Nod1, a CARD protein, enhances pro-interleukin-1beta processing through the interaction with pro-caspase-1.
    Biochem Biophys Res Commun. 2002 Dec 13;299(4):652-8 PMID: 12459189
  6. Solution structure of Apaf-1 CARD and its interaction with caspase-9 CARD: a structural basis for specific adaptor/caspase interaction.
    Proc Natl Acad Sci U S A. 1999 Sep 28;96(20):11265-70 PMID: 10500165
  7. An essential role for NOD1 in host recognition of bacterial peptidoglycan containing diaminopimelic acid.
    Nat Immunol. 2003 Jul;4(7):702-7 PMID: 12796777
  8. The death domain superfamily: a tale of two interfaces?
    Trends Biochem Sci. 2001 Aug;26(8):475-81 PMID: 11504623
  9. ICEBERG: a novel inhibitor of interleukin-1beta generation.
    Cell. 2000 Sep 29;103(1):99-111 PMID: 11051551
  10. Refinement of macromolecular structures by the maximum-likelihood method.
    Acta Crystallogr D Biol Crystallogr. 1997 May 1;53(Pt 3):240-55 PMID: 15299926
  11. NOD-LRR proteins: role in host-microbial interactions and inflammatory disease.
    Annu Rev Biochem. 2005;74:355-83 PMID: 15952891
  12. Nod1, an Apaf-1-like activator of caspase-9 and nuclear factor-kappaB.
    J Biol Chem. 1999 May 21;274(21):14560-7 PMID: 10329646
  13. Solution structure and mutagenesis of the caspase recruitment domain (CARD) from Apaf-1.
    Cell Death Differ. 1999 Nov;6(11):1125-32 PMID: 10578182
  14. Raster3D Version 2.0. A program for photorealistic molecular graphics.
    Acta Crystallogr D Biol Crystallogr. 1994 Nov 1;50(Pt 6):869-73 PMID: 15299354
  15. Toll-like receptors and innate immunity.
    J Mol Med (Berl). 2006 Sep;84(9):712-25 PMID: 16924467
  16. Innate immunity: the virtues of a nonclonal system of recognition.
    Cell. 1997 Oct 31;91(3):295-8 PMID: 9363937
  17. The finer things in X-ray diffraction data collection.
    Acta Crystallogr D Biol Crystallogr. 1999 Oct;55(Pt 10):1718-25 PMID: 10531521
  18. Free R value: a novel statistical quantity for assessing the accuracy of crystal structures.
    Nature. 1992 Jan 30;355(6359):472-5 PMID: 18481394
  19. Coot: model-building tools for molecular graphics.
    Acta Crystallogr D Biol Crystallogr. 2004 Dec;60(Pt 12 Pt 1):2126-32 PMID: 15572765
  20. Pushing the boundaries of molecular replacement with maximum likelihood.
    Acta Crystallogr D Biol Crystallogr. 2001 Oct;57(Pt 10):1373-82 PMID: 11567148
  21. CARD4/Nod1 mediates NF-kappaB and JNK activation by invasive Shigella flexneri.
    EMBO Rep. 2001 Aug;2(8):736-42 PMID: 11463746
  22. Crystal structure of Apaf-1 caspase recruitment domain: an alpha-helical Greek key fold for apoptotic signaling.
    J Mol Biol. 1999 Oct 29;293(3):439-47 PMID: 10543941
  23. Solution structure of NOD1 CARD and mutational analysis of its interaction with the CARD of downstream kinase RICK.
    J Mol Biol. 2007 Jan 5;365(1):160-74 PMID: 17054981
  24. Human CARD4 protein is a novel CED-4/Apaf-1 cell death family member that activates NF-kappaB.
    J Biol Chem. 1999 May 7;274(19):12955-8 PMID: 10224040
  25. Structural basis of procaspase-9 recruitment by the apoptotic protease-activating factor 1.
    Nature. 1999 Jun 10;399(6736):549-57 PMID: 10376594
Article Info
Journal
Biochemical and biophysical research communications
Abbr.
Biochem Biophys Res Commun
ISSN
0006-291X
Published
2007-02-02
Epub
2006-00-06
Pages
1-5
Language
English
Region
United States
NLM ID
0372516
PMCID
PMC1821002
Subset
IM
Grants
NIGMS NIH HHS · Y1-GM-1104 · United States
NIGMS NIH HHS · GM62904 · United States
NIGMS NIH HHS · R01 GM062904-05 · United States
NCI NIH HHS · Y1-CO-1020 · United States
NIGMS NIH HHS · R01 GM062904 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com