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PMID: 17098251 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, N.I.H., Intramural

Interactions between HIV-1 Gag molecules in solution: an inositol phosphate-mediated switch.

Journal of molecular biology ·Vol. 365 ·No. 3 ·2007-01-19 ·Pages 799-811

Datta SA, Zhao Z, Clark PK, Tarasov S, Alexandratos JN, Campbell SJ, Kvaratskhelia M, Lebowitz J, Rein A

Abstract

Retrovirus particle assembly is mediated by the Gag protein. Gag is a multi-domain protein containing discrete domains connected by flexible linkers. When recombinant HIV-1 Gag protein (lacking myristate at its N terminus and the p6 domain at its C terminus) is mixed with nucleic acid, it assembles into virus-like particles (VLPs) in a fully defined system in vitro. However, this assembly is defective in that the radius of curvature of the VLPs is far smaller than that of authentic immature virions. This defect can be corrected to varying degrees by addition of inositol phosphates to the assembly reaction. We have now explored the binding of inositol hexakisphosphate (IP6) to Gag and its effects upon the interactions between Gag protein molecules in solution. Our data indicate that basic regions at both ends of the protein contribute to IP6 binding. Gag is in monomer-dimer equilibrium in solution, and mutation of the previously described dimer interface within its capsid domain drastically reduces Gag dimerization. In contrast, when IP6 is added, Gag is in monomer-trimer rather than monomer-dimer equilibrium. The Gag protein with a mutation at the dimer interface also remains almost exclusively monomeric in IP6; thus the "dimer interface" is essential for the trimeric interaction in IP6. We discuss possible explanations for these results, including a change in conformation within the capsid domain induced by the binding of IP6 to other domains within the protein. The participation of both ends of Gag in IP6 interaction suggests that Gag is folded over in solution, with its ends near each other in three-dimensional space; direct support for this conclusion is provided in a companion manuscript. As Gag is an extended rod in immature virions, this apparent proximity of the ends in solution implies that it undergoes a major conformational change during particle assembly.

MeSH Terms
5-Hydroxytryptophan/metabolism Binding Sites Chromatography, Gel Dimerization Gene Products, gag/analysis,chemistry,metabolism HIV-1/metabolism Mass Spectrometry Mutant Proteins/analysis,chemistry,metabolism Mutation/genetics Phytic Acid/metabolism Protein Binding Protein Footprinting Protein Structure, Quaternary Protein Structure, Tertiary Solutions Tritium
Chemicals
Gene Products, gag Mutant Proteins Solutions Tritium Phytic Acid 5-Hydroxytryptophan
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Datta Siddhartha A K
HIV Drug Resistance Program, National Cancer Institute-Frederick, Frederick, MD 21702, USA.
Zhao Zhuojun
Clark Patrick K
Tarasov Sergey
Alexandratos Jerry N
Campbell Stephen J
Kvaratskhelia Mamuka
Lebowitz Jacob
Rein Alan
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Article Info
Journal
Journal of molecular biology
Abbr.
J Mol Biol
ISSN
0022-2836
Published
2007-01-19
Epub
2006-00-26
Pages
799-811
Language
English
Region
England
NLM ID
2985088R
PMCID
PMC1829305
Subset
IM
Grants
NCI NIH HHS · N01CO12400 · United States
NCI NIH HHS · N01 CO 12400 · United States
NCI NIH HHS · Z01 BC010511-03 · United States
Intramural NIH HHS · United States
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