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PMID: 17042495 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Delayed release of inorganic phosphate from elongation factor Tu following GTP hydrolysis on the ribosome.

Biochemistry ·Vol. 45 ·No. 42 ·2006-10-24 ·Pages 12767-74

Kothe U, Rodnina MV

Abstract

The dissociation of inorganic phosphate (P(i)) following GTP hydrolysis is a key step determining the functional state of many GTPases. Here, the timing of P(i) release from elongation factor Tu (EF-Tu) and its implications for the function of EF-Tu on the ribosome were studied by rapid kinetic techniques. It was found that P(i) release from EF-Tu is >20-fold slower than GTP cleavage and limits the rate of the conformational switch of EF-Tu from the GTP- to the GDP-bound form. The point mutation Gly94Ala in the switch 2 region of EF-Tu abolished the delay in P(i) release, suggesting that P(i) release is controlled by the mobility of the switch 2 region with Gly94 acting as a pivot. The rate of P(i) release or the conformational switch of EF-Tu does not affect the selection of aminoacyl-tRNA on the ribosome. Rather, the slow P(i) release may be a consequence of the tight interaction of the switch regions of EF-Tu with the gamma-phosphate and the ribosome in the GTPase activated state of the factor.

MeSH Terms
Escherichia coli/genetics,metabolism Escherichia coli Proteins/chemistry,metabolism Guanosine Diphosphate/metabolism Guanosine Triphosphate/metabolism Kinetics Models, Molecular Peptide Elongation Factor Tu/chemistry,metabolism Phosphates/metabolism Protein Conformation RNA, Messenger/metabolism RNA, Transfer, Amino Acyl/metabolism Ribosomes/metabolism
Chemicals
Escherichia coli Proteins Phosphates RNA, Messenger RNA, Transfer, Amino Acyl Guanosine Diphosphate Guanosine Triphosphate Peptide Elongation Factor Tu
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Kothe Ute
Institute of Physical Biochemistry, University of Witten/Herdecke, 58448 Witten, Germany.
Rodnina Marina V
Article Info
Journal
Biochemistry
Abbr.
Biochemistry
ISSN
0006-2960
Published
2006-10-24
Pages
12767-74
Language
English
Region
United States
NLM ID
0370623
Subset
IM
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