Home LiteratureArticle Details
PMID: 1703758 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Isolate B12, which harbours a virus-like element, represents a new species of the archaebacterial genus Sulfolobus, Sulfolobus shibatae, sp. nov.

Archives of microbiology ·Vol. 154 ·No. 6 ·1990-00-00 ·Pages 594-9

Grogan D, Palm P, Zillig W

Abstract

The Sulfolobus isolate B12 and its endogenous virus-like element SSV1 have provided a fruitful system for detailed analysis of certain aspects of archaebacterial molecular biology, especially those concerning gene expression. In the course of clarifying this isolate's taxonomic position, we determined DNA base composition, ability to grow autotrophically, nucleotide sequence of 16S ribosomal RNA, and level of total genomic homology to other Sulfolobus strains. Although the results generally demonstrate a similarity to S. solfataricus, DNA-DNA hybridisation and 16S rRNA sequence data indicate that isolate B12 in fact represents a distinct species.

MeSH Terms
Archaea/classification,genetics,growth & development Base Composition Base Sequence DNA, Bacterial/chemistry Electrophoresis, Polyacrylamide Gel Gene Expression Regulation, Bacterial Molecular Sequence Data Nucleic Acid Hybridization RNA, Bacterial/chemistry RNA, Ribosomal, 16S/chemistry Sequence Homology, Nucleic Acid
Chemicals
DNA, Bacterial RNA, Bacterial RNA, Ribosomal, 16S
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Grogan D
Max-Planck-Institut für Biochemie, Martinsried, Federal Republic of Germany.
Palm P
Zillig W
References (27)
27 references, click to expand
  1. Extremely thermophilic acidophilic bacteria convergent with Sulfolobus acidocaldarius.
    J Gen Microbiol. 1975 Jan;86(1):156-64 PMID: 234504
  2. Analysis of transcription in the archaebacterium Sulfolobus indicates that archaebacterial promoters are homologous to eukaryotic pol II promoters.
    Nucleic Acids Res. 1988 Jan 11;16(1):1-19 PMID: 2829113
  3. Comparative evaluation of gene expression in archaebacteria.
    Eur J Biochem. 1988 May 2;173(3):473-82 PMID: 3131139
  4. The complete nucleotide sequence of the ribosomal 16-S RNA from Excherichia coli. Experimental details and cistron heterogeneities.
    Eur J Biochem. 1979 Oct 15;100(2):399-410 PMID: 389624
  5. The phylogenetic relationships of three sulfur dependent archaebacteria.
    Syst Appl Microbiol. 1984;5:97-105 PMID: 11541975
  6. Phenotypic characterization of the archaebacterial genus Sulfolobus: comparison of five wild-type strains.
    J Bacteriol. 1989 Dec;171(12):6710-9 PMID: 2512283
  7. A new computer method for the storage and manipulation of DNA gel reading data.
    Nucleic Acids Res. 1980 Aug 25;8(16):3673-94 PMID: 7433103
  8. Transcription termination in the archaebacterium Sulfolobus: signal structures and linkage to transcription initiation.
    Nucleic Acids Res. 1988 Mar 25;16(6):2445-59 PMID: 3129698
  9. Tricine-sodium dodecyl sulfate-polyacrylamide gel electrophoresis for the separation of proteins in the range from 1 to 100 kDa.
    Anal Biochem. 1987 Nov 1;166(2):368-79 PMID: 2449095
  10. The structure of the yeast ribosomal RNA genes. I. The complete nucleotide sequence of the 18S ribosomal RNA gene from Saccharomyces cerevisiae.
    Nucleic Acids Res. 1980 Dec 11;8(23):5779-94 PMID: 7008030
  11. A plasmid in the archaebacterium Sulfolobus acidocaldarius.
    EMBO J. 1982;1(9):1035-8 PMID: 16453430
  12. Metabolism of RNA phosphorus in Escherichia coli infected with bacteriophage T7.
    Virology. 1958 Oct;6(2):545-55 PMID: 13593190
  13. A technique for radiolabeling DNA restriction endonuclease fragments to high specific activity.
    Anal Biochem. 1983 Jul 1;132(1):6-13 PMID: 6312838
  14. "Nonrandom" DNA sequence analysis in bacteriophage M13 by the dideoxy chain-termination method.
    Proc Natl Acad Sci U S A. 1982 Jul;79(14):4298-302 PMID: 6956859
  15. Characterization of the ribosomal RNA gene clusters in Halobacterium cutirubrum.
    J Biol Chem. 1985 Jan 25;260(2):899-906 PMID: 2981849
  16. Sequence of the 16S rRNA gene from the thermoacidophilic archaebacterium Sulfolobus solfataricus and its evolutionary implications.
    J Mol Evol. 1985;22(4):301-7 PMID: 3936935
  17. Rooting the archaebacterial tree: the pivotal role of Thermococcus celer in archaebacterial evolution.
    Syst Appl Microbiol. 1988;10:231-40 PMID: 11542150
  18. Population ecology of Sulfolobus acidocaldarius. II. Immunoecolgical studies.
    Arch Microbiol. 1974 May 16;97(3):181-94 PMID: 4211206
  19. Oxidation of elemental sulfur by Sulfolobus acidocaldarius.
    J Bacteriol. 1973 May;114(2):706-10 PMID: 4706192
  20. DNA sequencing with chain-terminating inhibitors.
    Proc Natl Acad Sci U S A. 1977 Dec;74(12):5463-7 PMID: 271968
  21. Sulfolobus: a new genus of sulfur-oxidizing bacteria living at low pH and high temperature.
    Arch Mikrobiol. 1972;84(1):54-68 PMID: 4559703
  22. Isolation of preribosomes from HeLa cells and their characterization by electrophoresis on uniform and exponential-gradient-polyacrylamide gels.
    Eur J Biochem. 1971 Nov 11;23(2):372-86 PMID: 5156377
  23. A comprehensive set of sequence analysis programs for the VAX.
    Nucleic Acids Res. 1984 Jan 11;12(1 Pt 1):387-95 PMID: 6546423
  24. Transfer RNA genes frequently serve as integration sites for prokaryotic genetic elements.
    Nucleic Acids Res. 1989 Mar 11;17(5):1907-14 PMID: 2467253
  25. SAV 1, a temperate u.v.-inducible DNA virus-like particle from the archaebacterium Sulfolobus acidocaldarius isolate B12.
    EMBO J. 1984 Sep;3(9):2165-8 PMID: 16453555
  26. Cloning in single-stranded bacteriophage as an aid to rapid DNA sequencing.
    J Mol Biol. 1980 Oct 25;143(2):161-78 PMID: 6260957
  27. Archaebacterial phylogeny: perspectives on the urkingdoms.
    Syst Appl Microbiol. 1986;7:161-77 PMID: 11542063
Article Info
Journal
Archives of microbiology
Abbr.
Arch Microbiol
ISSN
0302-8933
Published
1990-00-00
Pages
594-9
Language
English
Region
Germany
NLM ID
0410427
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com