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PMID: 16973438 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Deletion of a conserved, central ribosomal intersubunit RNA bridge.

Molecular cell ·Vol. 23 ·No. 6 ·2006-09-15 ·Pages 865-74

Ali IK, Lancaster L, Feinberg J, Joseph S, Noller HF

Abstract

Elucidation of the structure of the ribosome has stimulated numerous proposals for the roles of specific rRNA elements, including the universally conserved helix 69 (H69) of 23S rRNA, which forms intersubunit bridge B2a and contacts the D stems of A- and P-site tRNAs. H69 has been proposed to be involved not only in subunit association and tRNA binding but also in initiation, translocation, translational accuracy, the peptidyl transferase reaction, and ribosome recycling. Consistent with such proposals, deletion of H69 confers a dominant lethal phenotype. Remarkably, in vitro assays show that affinity-purified Deltah69 ribosomes have normal translational accuracy, synthesize a full-length protein from a natural mRNA template, and support EF-G-dependent translocation at wild-type rates. However, Deltah69 50S subunits are unable to associate with 30S subunits in the absence of tRNA, are defective in RF1-catalyzed peptide release, and can be recycled in the absence of RRF.

MeSH Terms
Base Sequence Conserved Sequence Escherichia coli/genetics Escherichia coli Proteins/metabolism Nucleic Acid Conformation Peptide Termination Factors/metabolism Protein Biosynthesis/physiology RNA, Messenger/metabolism RNA, Ribosomal, 23S/chemistry,genetics,physiology RNA, Transfer/metabolism Ribosomal Proteins/chemistry,genetics,metabolism Sequence Deletion
Chemicals
Escherichia coli Proteins Peptide Termination Factors RNA, Messenger RNA, Ribosomal, 23S Ribosomal Proteins prfA protein, E coli ribosome releasing factor RNA, Transfer
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Ali Iraj K
Center for Molecular Biology of RNA, Department of Molecular, Cell and Developmental Biology, Sinsheimer Laboratories, University of California, Santa Cruz, Santa Cruz, California 95064, USA.
Lancaster Laura
Feinberg Jason
Joseph Simpson
Noller Harry F
Article Info
Journal
Molecular cell
Abbr.
Mol Cell
ISSN
1097-2765
Published
2006-09-15
Pages
865-74
Language
English
Region
United States
NLM ID
9802571
Subset
IM
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