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PMID: 16383645 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Self-regulating gene: an exact solution.

Physical review. E, Statistical, nonlinear, and soft matter physics ·Vol. 72 ·No. 5 Pt 1 ·2005-11-00 ·Pages 051907

Hornos JE, Schultz D, Innocentini GC, Wang J, Walczak AM, Onuchic JN, Wolynes PG

Abstract

An exact steady-state solution of the stochastic equations governing the behavior of a gene regulated by a self-generated proteomic atmosphere is presented. The solutions depend on an adiabaticity parameter measuring the relative rate of DNA-protein unbinding and protein degradation. The steady-state solution reveals deviations from the commonly used Ackers et al approximation based on the equilibrium law of mass action, allowing anticooperative behavior in the "nonadiabatic" limit of slow binding and unbinding rates. Noise from binding and unbinding events dominates the shot noise of protein synthesis and degradation up to quite high values of the adiabaticity parameter.

MeSH Terms
Animals Computer Simulation DNA/genetics Feedback/physiology Gene Expression Regulation/genetics Humans Models, Genetic Protein Biosynthesis/genetics Proteome/genetics Stochastic Processes Transcription Factors/genetics,metabolism Transcription, Genetic/physiology
Chemicals
Proteome Transcription Factors DNA
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Hornos J E M
Center for Theoretical Biological Physics, University of California at San Diego, La Jolla, California 92093-0374, USA.
Schultz D
Innocentini G C P
Wang J
Walczak A M
Onuchic J N
Wolynes P G
Article Info
Journal
Physical review. E, Statistical, nonlinear, and soft matter physics
Abbr.
Phys Rev E Stat Nonlin Soft Matter Phys
ISSN
1539-3755
Published
2005-11-00
Epub
2005-00-04
Pages
051907
Language
English
Region
United States
NLM ID
101136452
Subset
IM
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