Home LiteratureArticle Details
PMID: 16369097 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Intensity statistics in twinned crystals with examples from the PDB.

Acta crystallographica. Section D, Biological crystallography ·Vol. 62 ·No. Pt 1 ·2006-01-00 ·Pages 83-95

Lebedev AA, Vagin AA, Murshudov GN

Abstract

Entries deposited in the Protein Data Bank as of February 2004 for which both model and X-ray data were available were analysed to identify cases of twinning using such simple statistics as the R factor between potential twin-related reflections. Careful consideration of all identified twins showed that in many cases twinning was ignored during structure solution and refinement. Manual analysis of the models showed that twinning often occurs in association with rotational pseudosymmetry parallel to the twinning operator. The coexistence of these two phenomena complicates the detection and diagnostics of twinning using currently available twinning tests. It was concluded that a twinning-detection step should be incorporated in every stage of structure analysis from data acquisition to refinement and validation.

MeSH Terms
Algorithms Crystallization Crystallography, X-Ray/methods Data Interpretation, Statistical Models, Statistical Proteins/chemistry Software
Chemicals
Proteins
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Lebedev Andrey A
Structural Biology Laboratory, Department of Chemistry, University of York, Heslington, York YO10 5YW, England. lebedev@ysbl.york.ac.uk
Vagin Alexei A
Murshudov Garib N
Article Info
Journal
Acta crystallographica. Section D, Biological crystallography
Abbr.
Acta Crystallogr D Biol Crystallogr
ISSN
0907-4449
Published
2006-01-00
Epub
2005-00-14
Pages
83-95
Language
English
Region
United States
NLM ID
9305878
Subset
IM
Grants
Wellcome Trust · United Kingdom
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com