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PMID: 16287267 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, Non-U.S. Gov't

Efficient primer strand extension beyond oxadiazole carboxamide nucleobases.

Journal of the American Chemical Society ·Vol. 127 ·No. 46 ·2005-11-23 ·Pages 16000-1

Adelfinskaya O, Nashine VC, Bergstrom DE, Davisson VJ

Abstract

Two oxadiazole carboxamide deoxyribonucleoside analogues are described that can be incorporated and efficiently extended by Taq DNA polymerase. The primer strand extension beyond oxadiazole nucleoside analogues occurs at rates similar to the values observed for the canonical Watson-Crick base pairs irrespective of the template nucleobase. These distinctive chemical effects in DNA polymerase extensions are attributed to the smaller size and unique electronic properties of the oxadiazole nucleobase.

MeSH Terms
Adenine/chemistry Cytosine/chemistry DNA Primers/chemistry Guanine/chemistry Molecular Structure Oxadiazoles/chemistry Thymine/chemistry
Chemicals
DNA Primers Oxadiazoles Guanine Cytosine Adenine Thymine
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Adelfinskaya Olga
Department of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, Indiana 47907, USA.
Nashine Vishal C
Bergstrom Donald E
Davisson V Jo
Article Info
Journal
Journal of the American Chemical Society
Abbr.
J Am Chem Soc
ISSN
0002-7863
Published
2005-11-23
Pages
16000-1
Language
English
Region
United States
NLM ID
7503056
Subset
IM
Grants
NCI NIH HHS · CA09634-12 · United States
NIGMS NIH HHS · GM 53155 · United States
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