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Helicobacter pylori strain-specific differences in genetic content, identified by microarray, influence host inflammatory responses.
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A virulence-associated gene microarray: a tool for investigation of the evolution and pathogenic potential of Staphylococcus aureus.
Microbiology. 2004 Nov;150(Pt 11):3763-3771
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Application of DNA microarrays to study the evolutionary genomics of Yersinia pestis and Yersinia pseudotuberculosis.
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Comparative genomics of BCG vaccines by whole-genome DNA microarray.
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Functional and evolutionary genomics of Mycobacterium tuberculosis: insights from genomic deletions in 100 strains.
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Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori.
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DNA microarray analysis of genome dynamics in Yersinia pestis: insights into bacterial genome microevolution and niche adaptation.
J Bacteriol. 2004 Aug;186(15):5138-46
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Comparative genomic analysis of Vibrio cholerae: genes that correlate with cholera endemic and pandemic disease.
Proc Natl Acad Sci U S A. 2002 Feb 5;99(3):1556-61
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Complete DNA sequence of a serogroup A strain of Neisseria meningitidis Z2491.
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Microarray-based resequencing of multiple Bacillus anthracis isolates.
Genome Biol. 2005;6(1):R10
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Evolutionary genomics of Staphylococcus aureus: insights into the origin of methicillin-resistant strains and the toxic shock syndrome epidemic.
Proc Natl Acad Sci U S A. 2001 Jul 17;98(15):8821-6
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Genome-wide molecular dissection of serotype M3 group A Streptococcus strains causing two epidemics of invasive infections.
Proc Natl Acad Sci U S A. 2004 Aug 10;101(32):11833-8
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Comparison of Campylobacter jejuni isolates implicated in Guillain-Barré syndrome and strains that cause enteritis by a DNA microarray.
Infect Immun. 2004 Feb;72(2):1199-203
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Insights on evolution of virulence and resistance from the complete genome analysis of an early methicillin-resistant Staphylococcus aureus strain and a biofilm-producing methicillin-resistant Staphylococcus epidermidis strain.
J Bacteriol. 2005 Apr;187(7):2426-38
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Conservation of genome content and virulence determinants among clinical and environmental isolates of Pseudomonas aeruginosa.
Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8484-9
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Tracking the evolution of the SARS coronavirus using high-throughput, high-density resequencing arrays.
Genome Res. 2004 Mar;14(3):398-405
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A new evolutionary scenario for the Mycobacterium tuberculosis complex.
Proc Natl Acad Sci U S A. 2002 Mar 19;99(6):3684-9
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Use of an open-reading frame-specific Campylobacter jejuni DNA microarray as a new genotyping tool for studying epidemiologically related isolates.
J Infect Dis. 2003 Feb 15;187(4):691-4
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Use of genome level-informed PCR as a new investigational approach for analysis of outbreak-associated Mycobacterium tuberculosis isolates.
J Clin Microbiol. 2004 May;42(5):1890-6
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Helicobacter pylori genetic diversity within the gastric niche of a single human host.
Proc Natl Acad Sci U S A. 2001 Dec 4;98(25):14625-30
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Genomic comparison of Salmonella enterica serovars and Salmonella bongori by use of an S. enterica serovar typhimurium DNA microarray.
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Extensive genomic diversity in pathogenic Escherichia coli and Shigella Strains revealed by comparative genomic hybridization microarray.
J Bacteriol. 2004 Jun;186(12):3911-21
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Whole genome comparison of Campylobacter jejuni human isolates using a low-cost microarray reveals extensive genetic diversity.
Genome Res. 2001 Oct;11(10):1706-15
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Factors characterizing Staphylococcus epidermidis invasiveness determined by comparative genomics.
Infect Immun. 2005 Mar;73(3):1856-60
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Genomic characterization of non-O1, non-O139 Vibrio cholerae reveals genes for a type III secretion system.
Proc Natl Acad Sci U S A. 2005 Mar 1;102(9):3465-70
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Genome diversification in Staphylococcus aureus: Molecular evolution of a highly variable chromosomal region encoding the Staphylococcal exotoxin-like family of proteins.
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Comparative genomics of Staphylococcus aureus musculoskeletal isolates.
J Bacteriol. 2005 Jan;187(2):576-92
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Yersinia pestis, the cause of plague, is a recently emerged clone of Yersinia pseudotuberculosis.
Proc Natl Acad Sci U S A. 1999 Nov 23;96(24):14043-8
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Comparative genomics identifies the genetic islands that distinguish Neisseria meningitidis, the agent of cerebrospinal meningitis, from other Neisseria species.
Infect Immun. 2002 Dec;70(12):7063-72
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Complete genome sequence of Yersinia pestis strain 91001, an isolate avirulent to humans.
DNA Res. 2004 Jun 30;11(3):179-97
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A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains.
Proc Natl Acad Sci U S A. 2000 Dec 19;97(26):14668-73
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Loss of RD1 contributed to the attenuation of the live tuberculosis vaccines Mycobacterium bovis BCG and Mycobacterium microti.
Mol Microbiol. 2002 Nov;46(3):709-17
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Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species.
PLoS Biol. 2005 Jan;3(1):e15
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Microevolution and history of the plague bacillus, Yersinia pestis.
Proc Natl Acad Sci U S A. 2004 Dec 21;101(51):17837-42
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Large-scale comparative genomics meta-analysis of Campylobacter jejuni isolates reveals low level of genome plasticity.
J Clin Microbiol. 2004 Oct;42(10):4566-76
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Comparative genome analysis of Campylobacter jejuni using whole genome DNA microarrays.
FEBS Lett. 2003 Nov 6;554(1-2):224-30
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Genome structure in the vole bacillus, Mycobacterium microti, a member of the Mycobacterium tuberculosis complex with a low virulence for humans.
Microbiology. 2004 May;150(Pt 5):1519-1527
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Genome sequence and comparative microarray analysis of serotype M18 group A Streptococcus strains associated with acute rheumatic fever outbreaks.
Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4668-73
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Evolutionary genomics of Salmonella: gene acquisitions revealed by microarray analysis.
Proc Natl Acad Sci U S A. 2002 Jun 25;99(13):8956-61
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Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.
Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):17020-4
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Comparative genomic indexing reveals the phylogenomics of Escherichia coli pathogens.
Infect Immun. 2003 Aug;71(8):4674-83
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Genome sequence of Chlamydophila caviae (Chlamydia psittaci GPIC): examining the role of niche-specific genes in the evolution of the Chlamydiaceae.
Nucleic Acids Res. 2003 Apr 15;31(8):2134-47
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