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PMID: 16055532 Published · ppublish English Journal Article Research Support, N.I.H., Extramural Research Support, U.S. Gov't, P.H.S.

A contribution to the theory of preferential interaction coefficients.

Biophysical journal ·Vol. 89 ·No. 4 ·2005-10-00 ·Pages 2258-76

Schurr JM, Rangel DP, Aragon SR

Abstract

A simple and complete derivation of the relation between concentration-based preferential interaction coefficients and integrals over the relevant pair correlation functions is presented for the first time. Certain omissions from the original treatment of pair correlation functions in multicomponent thermodynamics are also addressed. Connections between these concentration-based quantities and the more common molality-based preferential interaction coefficients are also derived. The pair correlation functions and preferential interaction coefficients of both solvent (water) and cosolvent (osmolyte) in the neighborhood of a macromolecule contain contributions from short-range repulsions and generic long-range attractions originating from the macromolecule, as well as from osmolyte-solvent exchange reactions beyond the macromolecular surface. These contributions are evaluated via a heuristic analysis that leads to simple insightful expressions for the preferential interaction coefficients in terms of the volumes excluded to the centers of the water and osmolyte molecules and a sum over the contributions of exchanging sites in the surrounding solution. The preferential interaction coefficients are predicted to exhibit the experimentally observed dependence on osmolyte concentration. Molality-based preferential interaction coefficients that were reported for seven different osmolytes interacting with bovine serum albumin are analyzed using the this formulation together with geometrical parameters reckoned from the crystal structure of human serum albumin. In all cases, the excluded volume contribution, which is the volume excluded to osmolyte centers minus that excluded to water centers in units of V1, exceeds in magnitude the contribution of the exchange reactions. Under the assumption that the exchange contribution is dominated by sites in the first surface-contiguous layer, the ratio of the average exchange constant to its neutral random value is determined for each osmolyte. These ratios all lie in the range 1.0 +/- 0.15, which indicates rather slight deviations from random occupation near the macromolecular surface. Finally, a mechanism is proposed whereby the chemical identity of an osmolyte might be concealed from partially ordered multilayers of water in clefts, grooves, and pits, and its consequences are noted.

MeSH Terms
Algorithms Binding Sites Biopolymers/chemistry Computer Simulation Models, Chemical Osmotic Pressure Protein Binding Serum Albumin, Bovine/chemistry Thermodynamics Water/chemistry
Chemicals
Biopolymers Water Serum Albumin, Bovine
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Schurr J Michael
Department of Chemistry, University of Washington, Seattle, WA 98195-1700, USA. schurr@chem.washington.edu
Rangel David P
Aragon Sergio R
References (35)
35 references, click to expand
  1. The B-DNA dodecamer at high resolution reveals a spine of water on sodium.
    Biochemistry. 1998 Jun 9;37(23):8341-55 PMID: 9622486
  2. The B form to Z form transition of poly(dG-m5dC) is sensitive to neutral solutes through an osmotic stress.
    Biochemistry. 1995 Nov 7;34(44):14400-7 PMID: 7578044
  3. Estimating hydration changes upon biomolecular reactions from osmotic stress, high pressure, and preferential hydration experiments.
    Proc Natl Acad Sci U S A. 2004 Feb 3;101(5):1195-9 PMID: 14732698
  4. Preferential and absolute interactions of solvent components with proteins in mixed solvent systems.
    Biopolymers. 1972;11(4):737-43 PMID: 5028510
  5. Vapor pressure osmometry studies of osmolyte-protein interactions: implications for the action of osmoprotectants in vivo and for the interpretation of "osmotic stress" experiments in vitro.
    Biochemistry. 2000 Apr 18;39(15):4455-71 PMID: 10757995
  6. Effects of small neutral osmolytes on the supercoiling free energy and intrinsic twist of p30delta DNA.
    Biopolymers. 2004 Nov;75(4):291-313 PMID: 15386272
  7. Dispersion-force effects in interfacial premelting of ice.
    Phys Rev B Condens Matter. 1995 Oct 15;52(16):12426-12433 PMID: 9980386
  8. Analysis of effects of salts and uncharged solutes on protein and nucleic acid equilibria and processes: a practical guide to recognizing and interpreting polyelectrolyte effects, Hofmeister effects, and osmotic effects of salts.
    Adv Protein Chem. 1998;51:281-353 PMID: 9615173
  9. The thermodynamics of solvent exchange.
    Biopolymers. 1994 Aug;34(8):1015-26 PMID: 8075384
  10. Differences in water release for the binding of EcoRI to specific and nonspecific DNA sequences.
    Proc Natl Acad Sci U S A. 1996 Oct 29;93(22):12272-7 PMID: 8901570
  11. Osmotic stress, crowding, preferential hydration, and binding: A comparison of perspectives.
    Proc Natl Acad Sci U S A. 2000 Apr 11;97(8):3987-92 PMID: 10760270
  12. Crystal structure of human serum albumin at 2.5 A resolution.
    Protein Eng. 1999 Jun;12(6):439-46 PMID: 10388840
  13. Estimation of excess solvation numbers of water and cosolvents from preferential interaction and volumetric experiments.
    J Chem Phys. 2004 Mar 8;120(10):4989-90 PMID: 15267361
  14. Macromolecules and water: probing with osmotic stress.
    Methods Enzymol. 1995;259:43-94 PMID: 8538466
  15. Protein-solvent preferential interactions, protein hydration, and the modulation of biochemical reactions by solvent components.
    Proc Natl Acad Sci U S A. 2002 Jul 23;99(15):9721-6 PMID: 12097640
  16. Theory of preferential solvation of nonelectrolytes.
    Cell Biophys. 1988 Jan-Jun;12:255-69 PMID: 2453283
  17. Probing alamethicin channels with water-soluble polymers. Size-modulated osmotic action.
    Biophys J. 1993 Nov;65(5):2097-105 PMID: 7507718
  18. The exclusion of glycine betaine from anionic biopolymer surface: why glycine betaine is an effective osmoprotectant but also a compatible solute.
    Biochemistry. 2004 Nov 23;43(46):14732-43 PMID: 15544344
  19. Protein solvation in allosteric regulation: a water effect on hemoglobin.
    Science. 1992 May 1;256(5057):655-9 PMID: 1585178
  20. Protein stability in mixed solvents: a balance of contact interaction and excluded volume.
    Biophys J. 2003 Jul;85(1):108-25 PMID: 12829469
  21. Generalized derivation of an exact relationship linking different coefficients that characterize thermodynamic effects of preferential interactions.
    Biophys Chem. 2002 Dec 10;101-102:497-511 PMID: 12488023
  22. The thermodynamic stability of proteins.
    Annu Rev Biophys Biophys Chem. 1987;16:115-37 PMID: 3297085
  23. Effects of hydration, ion release, and excluded volume on the melting of triplex and duplex DNA.
    Biochemistry. 1999 Jan 5;38(1):496-508 PMID: 9890933
  24. Water release associated with specific binding of gal repressor.
    EMBO J. 1995 Mar 15;14(6):1257-63 PMID: 7720716
  25. Control of protein stability and reactions by weakly interacting cosolvents: the simplicity of the complicated.
    Adv Protein Chem. 1998;51:355-432 PMID: 9615174
  26. A simple model for solvation in mixed solvents. Applications to the stabilization and destabilization of macromolecular structures.
    Biophys Chem. 1990 Aug 31;37(1-3):121-40 PMID: 2285775
  27. Water regulation of actinomycin-D binding to DNA: the interplay among drug affinity, DNA long-range conformation, and hydration.
    Biopolymers. 2000 Jan;53(1):46-59 PMID: 10644950
  28. The molecular surface package.
    J Mol Graph. 1993 Jun;11(2):139-41 PMID: 8347567
  29. The enthalpy of transfer of unfolded proteins into solutions of urea and guanidinium chloride.
    Biophys Chem. 1996 Apr 16;59(3):259-75 PMID: 8672715
  30. Preferential interactions of glycine betaine and of urea with DNA: implications for DNA hydration and for effects of these solutes on DNA stability.
    Biochemistry. 2004 Nov 23;43(46):14744-58 PMID: 15544345
  31. Structure of the potassium form of CGCGAATTCGCG: DNA deformation by electrostatic collapse around inorganic cations.
    Biochemistry. 1998 Dec 1;37(48):16877-87 PMID: 9836580
  32. The control of protein stability and association by weak interactions with water: how do solvents affect these processes?
    Annu Rev Biophys Biomol Struct. 1993;22:67-97 PMID: 8347999
  33. Preferential hydration and the exclusion of cosolvents from protein surfaces.
    J Chem Phys. 2004 Jul 8;121(2):1148-54 PMID: 15260652
  34. Selective binding and solvent denaturation.
    Biopolymers. 1987 Apr;26(4):549-59 PMID: 3567326
  35. Interpretation of preferential interaction coefficients of nonelectrolytes and of electrolyte ions in terms of a two-domain model.
    Biophys J. 1995 Mar;68(3):786-94 PMID: 7756545
Article Info
Journal
Biophysical journal
Abbr.
Biophys J
ISSN
0006-3495
Published
2005-10-00
Epub
2005-00-29
Pages
2258-76
Language
English
Region
United States
NLM ID
0370626
PMCID
PMC1366728
Subset
IM
Grants
NIGMS NIH HHS · R01 GM061685 · United States
NIGMS NIH HHS · R01 GM61685 · United States
Corrections
CommentIn
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