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PMID: 16002620 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Inferential structure determination.

Science (New York, N.Y.) ·Vol. 309 ·No. 5732 ·2005-07-08 ·Pages 303-6

Rieping W, Habeck M, Nilges M

Abstract

Macromolecular structures calculated from nuclear magnetic resonance data are not fully determined by experimental data but depend on subjective choices in data treatment and parameter settings. This makes it difficult to objectively judge the precision of the structures. We used Bayesian inference to derive a probability distribution that represents the unknown structure and its precision. This probability distribution also determines additional unknowns, such as theory parameters, that previously had to be chosen empirically. We implemented this approach by using Markov chain Monte Carlo techniques. Our method provides an objective figure of merit and improves structural quality.

MeSH Terms
Algorithms Bayes Theorem Crystallography, X-Ray Macromolecular Substances/chemistry Markov Chains Models, Molecular Molecular Conformation Monte Carlo Method Nuclear Magnetic Resonance, Biomolecular Probability Protein Conformation Proto-Oncogene Proteins/chemistry Proto-Oncogene Proteins c-fyn Thermodynamics src Homology Domains src-Family Kinases/chemistry
Chemicals
Macromolecular Substances Proto-Oncogene Proteins Proto-Oncogene Proteins c-fyn src-Family Kinases
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Rieping Wolfgang
Unité de Bioinformatique Structurale, Institut Pasteur, CNRS URA 2185, 25-28 rue du Docteur Roux, 75724 Paris CEDEX 15, France.
Habeck Michael
Nilges Michael
Article Info
Journal
Science (New York, N.Y.)
Abbr.
Science
ISSN
1095-9203
Published
2005-07-08
Pages
303-6
Language
English
Region
United States
NLM ID
0404511
Subset
IM
Databases
PDB
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