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PMID: 15892892 Published · epublish English Journal Article

Characterization of TRZ1, a yeast homolog of the human candidate prostate cancer susceptibility gene ELAC2 encoding tRNase Z.

BMC molecular biology ·Vol. 6 ·2005-05-13 ·Pages 12

Chen Y, Beck A, Davenport C, Chen Y, Shattuck D, Tavtigian SV

Abstract

In humans, mutation of ELAC2 is associated with an increased risk of prostate cancer. ELAC2 has been shown to have tRNase Z activity and is associated with the gamma-tubulin complex. In this work, we show that the yeast homolog of ELAC2, encoded by TRZ1 (tRNase Z 1), is involved genetically in RNA processing. The temperature sensitivity of a trz1 mutant can be rescued by multiple copies of REX2, which encodes a protein with RNA 3' processing activity, suggesting a role of Trz1p in RNA processing in vivo. Trz1p has two putative nucleotide triphosphate-binding motifs (P-loop) and a conserved histidine motif. The histidine motif and the putative nucleotide binding motif at the C-domain are important for Trz1p function because mutant proteins bearing changes to the critical residues in these motifs are unable to rescue deletion of TRZ1. The growth defect exhibited by trz1 yeast is not complemented by the heterologous ELAC2, suggesting that Trz1p may have additional functions in yeast. Our results provide genetic evidence that prostate cancer susceptibility gene ELAC2 may be involved in RNA processing, especially rRNA processing and mitochondrial function.

MeSH Terms
Amino Acid Motifs/physiology Amino Acid Sequence DNA, Recombinant/genetics Endoribonucleases/genetics,physiology Gene Expression Regulation, Neoplastic Genetic Complementation Test/methods Humans Male Mitochondria/metabolism Molecular Sequence Data Mutation Neoplasm Proteins/genetics,physiology Prostatic Neoplasms/genetics,pathology RNA Processing, Post-Transcriptional/genetics RNA Splicing RNA, Messenger/metabolism RNA, Ribosomal/metabolism RNA, Transfer/metabolism Saccharomyces cerevisiae/genetics,growth & development Saccharomyces cerevisiae Proteins/chemistry,genetics,physiology Sequence Analysis, Protein Sequence Homology, Amino Acid Temperature
Chemicals
DNA, Recombinant ELAC2 protein, human Neoplasm Proteins RNA, Messenger RNA, Ribosomal Saccharomyces cerevisiae Proteins RNA, Transfer Endoribonucleases tRNase Z, S cerevisiae
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Chen Yang
Myriad Genetics, Inc., 320 Wakara Way, Salt Lake City, UT 84108, USA. chenya@myriad.com
Beck Audrey
Davenport Christina
Chen Yuan
Shattuck Donna
Tavtigian Sean V
References (30)
30 references, click to expand
  1. RNA processing comes of age.
    J Cell Biol. 1981 Dec;91(3 Pt 2):28s-38s PMID: 6172431
  2. The N-terminal half-domain of the long form of tRNase Z is required for the RNase 65 activity.
    Nucleic Acids Res. 2004;32(15):4429-38 PMID: 15317868
  3. Primary structural constraints of P-loop of mitochondrial F1-ATPase from yeast.
    J Biol Chem. 1994 Apr 1;269(13):9424-8 PMID: 8144526
  4. Dominant negative mutator mutations in the mutS gene of Escherichia coli.
    J Bacteriol. 1994 Sep;176(17):5393-400 PMID: 8071216
  5. A single amino acid change in SNM1-encoded protein leads to thermoconditional deficiency for DNA cross-link repair in Saccharomyces cerevisiae.
    Mutat Res. 1994 Nov;315(3):275-9 PMID: 7526204
  6. Inactivation of YME2/RNA12, which encodes an integral inner mitochondrial membrane protein, causes increased escape of DNA from mitochondria to the nucleus in Saccharomyces cerevisiae.
    Mol Cell Biol. 1996 Jun;16(6):2764-71 PMID: 8649384
  7. The yeast La protein is required for the 3' endonucleolytic cleavage that matures tRNA precursors.
    Cell. 1997 May 2;89(3):393-402 PMID: 9150139
  8. YNT20, a bypass suppressor of yme1 yme2, encodes a putative 3'-5' exonuclease localized in mitochondria of Saccharomyces cerevisiae.
    Curr Genet. 1999 Jan;34(6):438-48 PMID: 9933355
  9. RNA processing and the evolution of eukaryotes.
    Nat Genet. 1999 Mar;21(3):265-9 PMID: 10080177
  10. Protein trans-acting factors involved in ribosome biogenesis in Saccharomyces cerevisiae.
    Mol Cell Biol. 1999 Dec;19(12):7897-912 PMID: 10567516
  11. Three conserved members of the RNase D family have unique and overlapping functions in the processing of 5S, 5.8S, U4, U5, RNase MRP and RNase P RNAs in yeast.
    EMBO J. 2000 Mar 15;19(6):1357-65 PMID: 10716935
  12. Like attracts like: getting RNA processing together in the nucleus.
    Science. 2000 May 26;288(5470):1385-9 PMID: 10827942
  13. A candidate prostate cancer susceptibility gene at chromosome 17p.
    Nat Genet. 2001 Feb;27(2):172-80 PMID: 11175785
  14. Eukaryotic ribonuclease P: increased complexity to cope with the nuclear pre-tRNA pathway.
    J Cell Physiol. 2001 Apr;187(1):11-20 PMID: 11241345
  15. Functional organization of the yeast proteome by systematic analysis of protein complexes.
    Nature. 2002 Jan 10;415(6868):141-7 PMID: 11805826
  16. Systematic identification of protein complexes in Saccharomyces cerevisiae by mass spectrometry.
    Nature. 2002 Jan 10;415(6868):180-3 PMID: 11805837
  17. Assigning a function to a conserved group of proteins: the tRNA 3'-processing enzymes.
    EMBO J. 2002 Jun 3;21(11):2769-77 PMID: 12032089
  18. Ngl2p is a Ccr4p-like RNA nuclease essential for the final step in 3'-end processing of 5.8S rRNA in Saccharomyces cerevisiae.
    RNA. 2002 Sep;8(9):1095-101 PMID: 12358428
  19. Meta-analysis of associations of the Ser217Leu and Ala541Thr variants in ELAC2 (HPC2) and prostate cancer.
    Am J Hum Genet. 2002 Dec;71(6):1475-8 PMID: 12515253
  20. The product of the candidate prostate cancer susceptibility gene ELAC2 interacts with the gamma-tubulin complex.
    Int J Cancer. 2003 Apr 10;104(3):283-8 PMID: 12569551
  21. A candidate prostate cancer susceptibility gene encodes tRNA 3' processing endoribonuclease.
    Nucleic Acids Res. 2003 May 1;31(9):2272-8 PMID: 12711671
  22. A panoramic view of yeast noncoding RNA processing.
    Cell. 2003 Jun 27;113(7):919-33 PMID: 12837249
  23. Endonucleolytic processing of CCA-less tRNA precursors by RNase Z in Bacillus subtilis.
    EMBO J. 2003 Sep 1;22(17):4534-43 PMID: 12941704
  24. Global analysis of protein localization in budding yeast.
    Nature. 2003 Oct 16;425(6959):686-91 PMID: 14562095
  25. Assigning function to yeast proteins by integration of technologies.
    Mol Cell. 2003 Dec;12(6):1353-65 PMID: 14690591
  26. Drosophila RNase Z processes mitochondrial and nuclear pre-tRNA 3' ends in vivo.
    Nucleic Acids Res. 2004;32(1):255-62 PMID: 14715923
  27. The Caenorhabditis elegans homolog of the putative prostate cancer susceptibility gene ELAC2, hoe-1, plays a role in germline proliferation.
    Dev Biol. 2004 Feb 1;266(1):151-60 PMID: 14729485
  28. A novel endonucleolytic mechanism to generate the CCA 3' termini of tRNA molecules in Thermotoga maritima.
    J Biol Chem. 2004 Apr 9;279(15):15688-97 PMID: 14749326
  29. Towards a structural classification of phosphate binding sites in protein-nucleotide complexes: an automated all-against-all structural comparison using geometric matching.
    Proteins. 2004 Aug 1;56(2):250-60 PMID: 15211509
  30. Mutants of yeast defective in sucrose utilization.
    Genetics. 1981 May;98(1):25-40 PMID: 7040163
Article Info
Journal
BMC molecular biology
Abbr.
BMC Mol Biol
ISSN
1471-2199
Published
2005-05-13
Epub
2005-00-13
Pages
12
Language
English
Region
England
NLM ID
100966983
PMCID
PMC1156898
Subset
IM
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