Home LiteratureArticle Details
PMID: 15861131 Published · ppublish English Comparative Study Journal Article

A quasi-atomic model of human adenovirus type 5 capsid.

The EMBO journal ·Vol. 24 ·No. 9 ·2005-05-04 ·Pages 1645-54

Fabry CM, Rosa-Calatrava M, Conway JF, Zubieta C, Cusack S, Ruigrok RW, Schoehn G

Abstract

Adenoviruses infect a wide range of vertebrates including humans. Their icosahedral capsids are composed of three major proteins: the trimeric hexon forms the facets and the penton, a noncovalent complex of the pentameric penton base and trimeric fibre proteins, is located at the 12 capsid vertices. Several proteins (IIIa, VI, VIII and IX) stabilise the capsid. We have obtained a 10 A resolution map of the human adenovirus 5 by image analysis from cryo-electron micrographs (cryoEMs). This map, in combination with the X-ray structures of the penton base and hexon, was used to build a quasi-atomic model of the arrangement of the two major capsid components and to analyse the hexon-hexon and hexon-penton interactions. The secondary proteins, notably VIII, were located by comparing cryoEM maps of native and pIX deletion mutant virions. Minor proteins IX and IIIa are located on the outside of the capsid, whereas protein VIII is organised with a T=2 lattice on the inner face of the capsid. The capsid organisation is compared with the known X-ray structure of bacteriophage PRD1.

MeSH Terms
Adenoviruses, Human/chemistry,genetics,ultrastructure Bacteriophage PRD1/chemistry Capsid/chemistry,ultrastructure Capsid Proteins/chemistry Cryoelectron Microscopy Models, Molecular Mutation
Chemicals
Capsid Proteins hexon capsid protein, Adenovirus penton protein, adenovirus
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Fabry Céline M S
Laboratoire de Virologie Moléculaire et Structurale, FRE 2854 CNRS-Université Joseph Fourier, Grenoble Cedex, France.
Rosa-Calatrava Manuel
Conway James F
Zubieta Chloé
Cusack Stephen
Ruigrok Rob W H
Schoehn Guy
References (45)
45 references, click to expand
  1. On the fitting of model electron densities into EM reconstructions: a reciprocal-space formulation.
    Acta Crystallogr D Biol Crystallogr. 2002 Oct;58(Pt 10 Pt 2):1820-5 PMID: 12351826
  2. Empty capsids in column-purified recombinant adenovirus preparations.
    Hum Gene Ther. 2001 Oct 10;12(15):1923-36 PMID: 11589834
  3. Genetic content and evolution of adenoviruses.
    J Gen Virol. 2003 Nov;84(Pt 11):2895-908 PMID: 14573794
  4. Issues of resolution and polymorphism in single-particle reconstruction.
    J Struct Biol. 2003 Oct-Nov;144(1-2):162-71 PMID: 14643219
  5. UCSF Chimera--a visualization system for exploratory research and analysis.
    J Comput Chem. 2004 Oct;25(13):1605-12 PMID: 15264254
  6. Removal of pentons from particles of adenovirus type 2.
    Virology. 1969 Nov;39(3):599-604 PMID: 4982541
  7. Investigation on intranuclear paracrystalline inclusions induced by adenovirus 5 in KB cells.
    J Gen Virol. 1970 Feb;6(2):329-32 PMID: 5437472
  8. Three dimensional reconstructions of spherical viruses by fourier synthesis from electron micrographs.
    Nature. 1970 May 2;226(5244):421-5 PMID: 4314822
  9. Adenovirus type 5 virions can be assembled in vivo in the absence of detectable polypeptide IX.
    J Virol. 1981 Sep;39(3):977-80 PMID: 7288921
  10. Nucleic acid-binding properties of adenovirus structural polypeptides.
    J Gen Virol. 1982 Nov;63 (Pt 1):69-79 PMID: 7175505
  11. Ion etching of human adenovirus 2: structure of the core.
    J Virol. 1984 Jul;51(1):52-6 PMID: 6726895
  12. The structure of the adenovirus capsid. II. The packing symmetry of hexon and its implications for viral architecture.
    J Mol Biol. 1985 Sep 5;185(1):125-43 PMID: 4046035
  13. Molecular composition of the adenovirus type 2 virion.
    J Virol. 1985 Nov;56(2):439-48 PMID: 4057357
  14. Organization of double-stranded DNA in bacteriophages: a study by cryo-electron microscopy of vitrified samples.
    EMBO J. 1987 May;6(5):1507-12 PMID: 2956092
  15. Adenovirus polypeptide IX revealed as capsid cement by difference images from electron microscopy and crystallography.
    EMBO J. 1989 Dec 1;8(12):3563-70 PMID: 2583109
  16. Structure of adenovirus fibre. II. Morphology of single fibres.
    J Mol Biol. 1990 Oct 20;215(4):589-96 PMID: 2231721
  17. Liquid-crystalline, phage-like packing of encapsidated DNA in herpes simplex virus.
    Cell. 1991 Mar 8;64(5):1007-15 PMID: 1848156
  18. Improved methods for building protein models in electron density maps and the location of errors in these models.
    Acta Crystallogr A. 1991 Mar 1;47 ( Pt 2):110-9 PMID: 2025413
  19. Image reconstruction reveals the complex molecular organization of adenovirus.
    Cell. 1991 Oct 4;67(1):145-54 PMID: 1913814
  20. Combined EM/X-ray imaging yields a quasi-atomic model of the adenovirus-related bacteriophage PRD1 and shows key capsid and membrane interactions.
    Structure. 2001 Oct;9(10):917-30 PMID: 11591347
  21. Structure of Broadhaven virus by cryoelectron microscopy: correlation of structural and antigenic properties of Broadhaven virus and bluetongue virus outer capsid proteins.
    Virology. 1997 Sep 1;235(2):191-200 PMID: 9281498
  22. Structure of adenovirus complexed with its internalization receptor, alphavbeta5 integrin.
    J Virol. 1999 Aug;73(8):6759-68 PMID: 10400774
  23. Viral evolution revealed by bacteriophage PRD1 and human adenovirus coat protein structures.
    Cell. 1999 Sep 17;98(6):825-33 PMID: 10499799
  24. Adenovirus type 41 lacks an RGD alpha(v)-integrin binding motif on the penton base and undergoes delayed uptake in A549 cells.
    Virus Res. 1999 Nov;64(2):125-36 PMID: 10518709
  25. Insights into assembly from structural analysis of bacteriophage PRD1.
    Nature. 2004 Nov 4;432(7013):68-74 PMID: 15525981
  26. Does common architecture reveal a viral lineage spanning all three domains of life?
    Mol Cell. 2004 Dec 3;16(5):673-85 PMID: 15574324
  27. The structure of the human adenovirus 2 penton.
    Mol Cell. 2005 Jan 7;17(1):121-35 PMID: 15629723
  28. Adenovirus structure.
    Hum Gene Ther. 2004 Dec;15(12):1167-76 PMID: 15684694
  29. Integrins alpha v beta 3 and alpha v beta 5 promote adenovirus internalization but not virus attachment.
    Cell. 1993 Apr 23;73(2):309-19 PMID: 8477447
  30. Difference imaging of adenovirus: bridging the resolution gap between X-ray crystallography and electron microscopy.
    EMBO J. 1993 Jul;12(7):2589-99 PMID: 8334984
  31. Stepwise dismantling of adenovirus 2 during entry into cells.
    Cell. 1993 Nov 5;75(3):477-86 PMID: 8221887
  32. Adenovirus structure by X-ray crystallography and electron microscopy.
    Curr Top Microbiol Immunol. 1995;199 ( Pt 1):25-38 PMID: 7555058
  33. Adenovirus fiber.
    Curr Top Microbiol Immunol. 1995;199 ( Pt 1):163-200 PMID: 7555054
  34. A model-based approach for determining orientations of biological macromolecules imaged by cryoelectron microscopy.
    J Struct Biol. 1996 Jan-Feb;116(1):120-30 PMID: 8742733
  35. Adenovirus 3 penton dodecahedron exhibits structural changes of the base on fibre binding.
    EMBO J. 1996 Dec 16;15(24):6841-6 PMID: 9003759
  36. Adenovirus dodecahedron, a new vector for human gene transfer.
    Nat Biotechnol. 1997 Jan;15(1):52-6 PMID: 9035106
  37. A triple beta-spiral in the adenovirus fibre shaft reveals a new structural motif for a fibrous protein.
    Nature. 1999 Oct 28;401(6756):935-8 PMID: 10553913
  38. Methods for reconstructing density maps of "single" particles from cryoelectron micrographs to subnanometer resolution.
    J Struct Biol. 1999 Dec 1;128(1):106-18 PMID: 10600565
  39. Type-specific epitope locations revealed by X-ray crystallographic study of adenovirus type 5 hexon.
    Mol Ther. 2000 Jan;1(1):18-30 PMID: 10933908
  40. Why are "natively unfolded" proteins unstructured under physiologic conditions?
    Proteins. 2000 Nov 15;41(3):415-27 PMID: 11025552
  41. Update on adenovirus and its vectors.
    J Gen Virol. 2000 Nov;81(Pt 11):2573-604 PMID: 11038369
  42. Functional analysis of adenovirus protein IX identifies domains involved in capsid stability, transcriptional activity, and nuclear reorganization.
    J Virol. 2001 Aug;75(15):7131-41 PMID: 11435594
  43. Polypeptide composition of an adenovirus type 5 used in cancer gene therapy.
    J Chromatogr A. 2001 Jun 29;921(1):39-48 PMID: 11461012
  44. Using situs for flexible and rigid-body fitting of multiresolution single-molecule data.
    J Struct Biol. 2001 Feb-Mar;133(2-3):193-202 PMID: 11472090
  45. Flexibility of the adenovirus fiber is required for efficient receptor interaction.
    J Virol. 2003 Jul;77(13):7225-35 PMID: 12805421
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
2005-05-04
Epub
2005-00-21
Pages
1645-54
Language
English
Region
England
NLM ID
8208664
PMCID
PMC1142584
Subset
IM
Databases
PDB
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com