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PMID: 15659578 Published · epublish English Journal Article Research Support, Non-U.S. Gov't

Conserved and specific functions of mammalian ssu72.

Nucleic acids research ·Vol. 33 ·No. 2 ·2005-00-00 ·Pages 464-77

St-Pierre B, Liu X, Kha LC, Zhu X, Ryan O, Jiang Z, Zacksenhaus E

Abstract

We describe the cloning and characterization of a human homolog of the yeast transcription/RNA-processing factor Ssu72, following a yeast two-hybrid screen for pRb-binding factors in the prostate gland. Interaction between hSsu72 and pRb was observed in transfected mammalian cells and involved multiple domains in pRb; however, so far, mutual effects of these two factors could not be demonstrated. Like the yeast counterpart, mammalian Ssu72 associates with TFIIB and the yeast cleavage/polyadenylation factor Pta1, and exhibits intrinsic phosphatase activity. Mammals contain a single ssu72 gene and a few pseudogenes. During mouse embryogenesis, ssu72 was highly expressed in the nervous system and intestine; high expression in the nervous system persisted in adult mice and was also readily observed in multiple human tumor cell lines. Both endogenous and ectopically expressed mammalian Ssu72 proteins resided primarily in the cytoplasm and only partly in the nucleus. Interestingly, fusion to a strong nuclear localization signal conferred nuclear localization only in a fraction of transfected cells, suggesting active tethering in the cytoplasm. Suppression of ssu72 expression in mammalian cells by siRNA did not reduce proliferation/survival, and its over-expression did not affect transcription of candidate genes in transient reporter assays. Despite high conservation, hssu72 was unable to rescue an ssu72 lethal mutation in yeast. Together, our results highlight conserved and mammalian specific characteristics of mammalian ssu72.

MeSH Terms
Amino Acid Sequence Animals COS Cells Carrier Proteins/analysis,genetics,physiology Cell Growth Processes Cell Nucleus/chemistry Chlorocebus aethiops Cloning, Molecular Cytoplasm/chemistry Gene Expression Regulation, Developmental Genetic Complementation Test Humans Mice Molecular Sequence Data Nuclear Localization Signals Phosphoprotein Phosphatases/metabolism RNA, Messenger/analysis Retinoblastoma Protein/metabolism Saccharomyces cerevisiae Proteins/genetics,metabolism Transcription Factor TFIIB/metabolism Transcriptional Activation Two-Hybrid System Techniques mRNA Cleavage and Polyadenylation Factors/genetics,metabolism,physiology
Chemicals
Carrier Proteins Nuclear Localization Signals PTA1 protein, S cerevisiae RNA, Messenger Retinoblastoma Protein SSU72 protein, S cerevisiae Saccharomyces cerevisiae Proteins Transcription Factor TFIIB mRNA Cleavage and Polyadenylation Factors Phosphoprotein Phosphatases SSU72 protein, human
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
St-Pierre Benoit
Division of Cell and Molecular Biology, Toronto General Research Institute, University Health Network 67 College Street, Room 407, Toronto, Ontario, Canada M5G 2m1.
Liu Xudong
Kha Lan-Chau T
Zhu Xudong
Ryan Owen
Jiang Zhe
Zacksenhaus Eldad
References (62)
62 references, click to expand
  1. Capping, splicing, and 3' processing are independently stimulated by RNA polymerase II: different functions for different segments of the CTD.
    Genes Dev. 2001 Jul 15;15(14):1783-95 PMID: 11459828
  2. Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis.
    Science. 1999 Aug 6;285(5429):901-6 PMID: 10436161
  3. The retinoblastoma protein acts as a transcriptional coactivator required for osteogenic differentiation.
    Mol Cell. 2001 Aug;8(2):303-16 PMID: 11545733
  4. Requirement of tissue-selective TBP-associated factor TAFII105 in ovarian development.
    Science. 2001 Sep 14;293(5537):2084-7 PMID: 11557891
  5. Activation of retinoblastoma protein in mammary gland leads to ductal growth suppression, precocious differentiation, and adenocarcinoma.
    J Cell Biol. 2002 Jan 7;156(1):185-98 PMID: 11777937
  6. Identification of essential genes in cultured mammalian cells using small interfering RNAs.
    J Cell Sci. 2001 Dec;114(Pt 24):4557-65 PMID: 11792820
  7. Functional organization of the yeast proteome by systematic analysis of protein complexes.
    Nature. 2002 Jan 10;415(6868):141-7 PMID: 11805826
  8. Requirements of the RNA polymerase II C-terminal domain for reconstituting pre-mRNA 3' cleavage.
    Mol Cell Biol. 2002 Mar;22(6):1684-92 PMID: 11865048
  9. Functional interaction of yeast pre-mRNA 3' end processing factors with RNA polymerase II.
    Mol Cell. 2002 May;9(5):1101-11 PMID: 12049745
  10. The mRNA assembly line: transcription and processing machines in the same factory.
    Curr Opin Cell Biol. 2002 Jun;14(3):336-42 PMID: 12067656
  11. Sp1 and TAFII130 transcriptional activity disrupted in early Huntington's disease.
    Science. 2002 Jun 21;296(5576):2238-43 PMID: 11988536
  12. Regulation of transcription elongation by phosphorylation.
    Biochim Biophys Acta. 2002 Sep 13;1577(2):261-275 PMID: 12213657
  13. Gene silencing in mammals by small interfering RNAs.
    Nat Rev Genet. 2002 Oct;3(10):737-47 PMID: 12360232
  14. A novel mitochondrial protein, Tar1p, is encoded on the antisense strand of the nuclear 25S rDNA.
    Genes Dev. 2002 Nov 1;16(21):2755-60 PMID: 12414727
  15. Stra13 homodimers repress transcription through class B E-box elements.
    J Biol Chem. 2002 Nov 29;277(48):46544-51 PMID: 12297495
  16. A role for SSU72 in balancing RNA polymerase II transcription elongation and termination.
    Mol Cell. 2002 Nov;10(5):1139-50 PMID: 12453421
  17. Regulation of tumor suppressors by nuclear-cytoplasmic shuttling.
    Exp Cell Res. 2003 Jan 15;282(2):59-69 PMID: 12531692
  18. Ssu72 is a phosphatase essential for transcription termination of snoRNAs and specific mRNAs in yeast.
    EMBO J. 2003 Apr 1;22(7):1588-98 PMID: 12660165
  19. Functional interactions between the transcription and mRNA 3' end processing machineries mediated by Ssu72 and Sub1.
    Genes Dev. 2003 Apr 15;17(8):1030-42 PMID: 12704082
  20. The mRNA transcription/processing factor Ssu72 is a potential tyrosine phosphatase.
    J Biol Chem. 2003 May 2;278(18):15917-21 PMID: 12606538
  21. A novel RNA polymerase II C-terminal domain phosphatase that preferentially dephosphorylates serine 5.
    J Biol Chem. 2003 Jul 11;278(28):26078-85 PMID: 12721286
  22. Organization and function of APT, a subcomplex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and small nucleolar RNA 3'-ends.
    J Biol Chem. 2003 Aug 29;278(35):33000-10 PMID: 12819204
  23. Ssu72 protein mediates both poly(A)-coupled and poly(A)-independent termination of RNA polymerase II transcription.
    Mol Cell Biol. 2003 Sep;23(18):6339-49 PMID: 12944462
  24. Coordinated expression of Rb gene family in the mammary gland.
    Mech Dev. 2002 Dec;119 Suppl 1:S39-42 PMID: 14516658
  25. Coupling of caspase-9 to Apaf1 in response to loss of pRb or cytotoxic drugs is cell-type-specific.
    EMBO J. 2004 Jan 28;23(2):460-72 PMID: 14713951
  26. HSF1 modulation of Hsp70 mRNA polyadenylation via interaction with symplekin.
    J Biol Chem. 2004 Mar 12;279(11):10551-5 PMID: 14707147
  27. New roles for the RB tumor suppressor protein.
    Curr Opin Genet Dev. 2004 Feb;14(1):55-64 PMID: 15108806
  28. Ssu72 Is an RNA polymerase II CTD phosphatase.
    Mol Cell. 2004 May 7;14(3):387-94 PMID: 15125841
  29. Sequence requirements for nuclear location of simian virus 40 large-T antigen.
    Nature. 1984 Sep 6-11;311(5981):33-8 PMID: 6088992
  30. Interaction of myogenic factors and the retinoblastoma protein mediates muscle cell commitment and differentiation.
    Cell. 1993 Feb 12;72(3):309-24 PMID: 8381715
  31. The activation domain of transcription factor PU.1 binds the retinoblastoma (RB) protein and the transcription factor TFIID in vitro: RB shows sequence similarity to TFIID and TFIIB.
    Proc Natl Acad Sci U S A. 1993 Feb 15;90(4):1580-4 PMID: 8434021
  32. A bipartite nuclear localization signal in the retinoblastoma gene product and its importance for biological activity.
    Mol Cell Biol. 1993 Aug;13(8):4588-99 PMID: 8336704
  33. Transcriptional repression by Drosophila and mammalian Polycomb group proteins in transfected mammalian cells.
    Mol Cell Biol. 1994 Mar;14(3):1721-32 PMID: 7906858
  34. Characterization of the human RB1 promoter and of elements involved in transcriptional regulation.
    Cell Growth Differ. 1994 May;5(5):467-74 PMID: 8049153
  35. Collaboration of G1 cyclins in the functional inactivation of the retinoblastoma protein.
    Genes Dev. 1994 Aug 1;8(15):1759-71 PMID: 7958855
  36. The retinoblastoma-susceptibility gene product binds directly to the human TATA-binding protein-associated factor TAFII250.
    Proc Natl Acad Sci U S A. 1995 Apr 11;92(8):3115-9 PMID: 7724524
  37. Synthetic enhancement of a TFIIB defect by a mutation in SSU72, an essential yeast gene encoding a novel protein that affects transcription start site selection in vivo.
    Mol Cell Biol. 1996 Apr;16(4):1557-66 PMID: 8657130
  38. Identifying a species-specific region of yeast TF11B in vivo.
    Mol Cell Biol. 1996 Jul;16(7):3651-7 PMID: 8668181
  39. A new member of the hsp90 family of molecular chaperones interacts with the retinoblastoma protein during mitosis and after heat shock.
    Mol Cell Biol. 1996 Sep;16(9):4691-9 PMID: 8756626
  40. Symplekin, a novel type of tight junction plaque protein.
    J Cell Biol. 1996 Aug;134(4):1003-18 PMID: 8769423
  41. Retinoblastoma protein positively regulates terminal adipocyte differentiation through direct interaction with C/EBPs.
    Genes Dev. 1996 Nov 1;10(21):2794-804 PMID: 8946919
  42. pRb controls proliferation, differentiation, and death of skeletal muscle cells and other lineages during embryogenesis.
    Genes Dev. 1996 Dec 1;10(23):3051-64 PMID: 8957005
  43. The C-terminal domain of RNA polymerase II couples mRNA processing to transcription.
    Nature. 1997 Jan 23;385(6614):357-61 PMID: 9002523
  44. The retinoblastoma gene family is differentially expressed during embryogenesis.
    Oncogene. 1997 Apr 17;14(15):1789-97 PMID: 9150384
  45. Transcription factor TFIID recruits factor CPSF for formation of 3' end of mRNA.
    Nature. 1997 Sep 25;389(6649):399-402 PMID: 9311784
  46. Structure of the retinoblastoma tumour-suppressor pocket domain bound to a peptide from HPV E7.
    Nature. 1998 Feb 26;391(6670):859-65 PMID: 9495340
  47. Coupling termination of transcription to messenger RNA maturation in yeast.
    Science. 1998 Apr 10;280(5361):298-301 PMID: 9535662
  48. Nuclear localization conferred by the pocket domain of the retinoblastoma gene product.
    Biochim Biophys Acta. 1999 Sep 21;1451(2-3):288-96 PMID: 10556583
  49. Complex protein interactions within the human polyadenylation machinery identify a novel component.
    Mol Cell Biol. 2000 Mar;20(5):1515-25 PMID: 10669729
  50. Mutagenesis of the pRB pocket reveals that cell cycle arrest functions are separable from binding to viral oncoproteins.
    Mol Cell Biol. 2000 May;20(10):3715-27 PMID: 10779361
  51. Functional interaction between Ssu72 and the Rpb2 subunit of RNA polymerase II in Saccharomyces cerevisiae.
    Mol Cell Biol. 2000 Nov;20(22):8343-51 PMID: 11046131
  52. The regulation of E2F by pRB-family proteins.
    Genes Dev. 1998 Aug 1;12(15):2245-62 PMID: 9694791
  53. Chromatin remodeling and Rb activity.
    Curr Opin Cell Biol. 2000 Dec;12(6):685-9 PMID: 11063932
  54. The BARD1-CstF-50 interaction links mRNA 3' end formation to DNA damage and tumor suppression.
    Cell. 2001 Mar 9;104(5):743-53 PMID: 11257228
  55. Developmental regulation of transcription by a tissue-specific TAF homolog.
    Genes Dev. 2001 Apr 15;15(8):1021-30 PMID: 11316795
  56. Spermiogenesis deficiency in mice lacking the Trf2 gene.
    Science. 2001 May 11;292(5519):1153-5 PMID: 11352070
  57. Duplexes of 21-nucleotide RNAs mediate RNA interference in cultured mammalian cells.
    Nature. 2001 May 24;411(6836):494-8 PMID: 11373684
  58. Retinoblastoma protein partners.
    Adv Cancer Res. 2001;82:1-54 PMID: 11447760
  59. Functional interaction of BRCA1-associated BARD1 with polyadenylation factor CstF-50.
    Science. 1999 Sep 3;285(5433):1576-9 PMID: 10477523
  60. Mutational analysis of yeast TFIIB. A functional relationship between Ssu72 and Sub1/Tsp1 defined by allele-specific interactions with TFIIB.
    Genetics. 1999 Oct;153(2):643-52 PMID: 10511545
  61. Pta1, a component of yeast CF II, is required for both cleavage and poly(A) addition of mRNA precursor.
    Mol Cell Biol. 1999 Nov;19(11):7733-40 PMID: 10523662
  62. Late arrest of spermiogenesis and germ cell apoptosis in mice lacking the TBP-like TLF/TRF2 gene.
    Mol Cell. 2001 Mar;7(3):509-15 PMID: 11463376
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2005-00-00
Epub
2005-00-19
Pages
464-77
Language
English
Region
England
NLM ID
0411011
PMCID
PMC548335
Subset
IM
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