Abstract
The Yeast Resource Center Public Data Repository (YRC PDR) serves as a single point of access for the experimental data produced from many collaborations typically studying Saccharomyces cerevisiae (baker's yeast). The experimental data include large amounts of mass spectrometry results from protein co-purification experiments, yeast two-hybrid interaction experiments, fluorescence microscopy images and protein structure predictions. All of the data are accessible via searching by gene or protein name, and are available on the Web at http://www.yeastrc.org/pdr/.
MeSH Terms
Databases, Protein
Mass Spectrometry
Microscopy, Fluorescence
Protein Structure, Tertiary
Saccharomyces cerevisiae/genetics
Saccharomyces cerevisiae Proteins/analysis,chemistry,genetics
Two-Hybrid System Techniques
User-Computer Interface
Chemicals
Saccharomyces cerevisiae Proteins
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Riffle Michael
Department of Biochemistry, University of Washington, Seattle, WA 98195, USA.
Malmström Lars
Davis Trisha N
References (15)
15 references, click to expand
-
A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae.
Nature. 2000 Feb 10;403(6770):623-7
PMID: 10688190
-
The Protein Data Bank.
Nucleic Acids Res. 2000 Jan 1;28(1):235-42
PMID: 10592235
-
A protein interaction map for cell polarity development.
J Cell Biol. 2001 Aug 6;154(3):549-71
PMID: 11489916
-
Rosetta in CASP4: progress in ab initio protein structure prediction.
Proteins. 2001;Suppl 5:119-26
PMID: 11835488
-
DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics.
J Proteome Res. 2002 Jan-Feb;1(1):21-6
PMID: 12643522
-
Automated prediction of CASP-5 structures using the Robetta server.
Proteins. 2003;53 Suppl 6:524-33
PMID: 14579342
-
Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.
Nucleic Acids Res. 2004 Jan 1;32(Database issue):D311-4
PMID: 14681421
-
Assigning function to yeast proteins by integration of technologies.
Mol Cell. 2003 Dec;12(6):1353-65
PMID: 14690591
-
Saccharomyces genome database: underlying principles and organisation.
Brief Bioinform. 2004 Mar;5(1):9-22
PMID: 15153302
-
Localization of proteins that are coordinately expressed with Cln2 during the cell cycle.
Yeast. 2004 Jul 15;21(9):793-800
PMID: 15282802
-
Assembly of protein tertiary structures from fragments with similar local sequences using simulated annealing and Bayesian scoring functions.
J Mol Biol. 1997 Apr 25;268(1):209-25
PMID: 9149153
-
WebMol--a Java-based PDB viewer.
Trends Biochem Sci. 1997 Jul;22(7):274-5
PMID: 9255071
-
Improved recognition of native-like protein structures using a combination of sequence-dependent and sequence-independent features of proteins.
Proteins. 1999 Jan 1;34(1):82-95
PMID: 10336385
-
Ab initio protein structure prediction of CASP III targets using ROSETTA.
Proteins. 1999;Suppl 3:171-6
PMID: 10526365
-
Gene ontology: tool for the unification of biology. The Gene Ontology Consortium.
Nat Genet. 2000 May;25(1):25-9
PMID: 10802651