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PMID: 15608200 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S.

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis.

Nucleic acids research ·Vol. 33 ·No. Database issue ·2005-01-01 ·Pages D294-6

Cole JR, Chai B, Farris RJ, Wang Q, Kulam SA, McGarrell DM, Garrity GM, Tiedje JM

Abstract

The Ribosomal Database Project (RDP-II) provides the research community with aligned and annotated rRNA gene sequences, along with analysis services and a phylogenetically consistent taxonomic framework for these data. Updated monthly, these services are made available through the RDP-II website (http://rdp.cme.msu.edu/). RDP-II release 9.21 (August 2004) contains 101,632 bacterial small subunit rRNA gene sequences in aligned and annotated format. High-throughput tools for initial taxonomic placement, identification of related sequences, probe and primer testing, data navigation and subalignment download are provided. The RDP-II email address for questions or comments is rdpstaff@msu.edu.

MeSH Terms
DNA Probes DNA, Ribosomal/chemistry,classification Databases, Nucleic Acid Genes, rRNA RNA, Bacterial/genetics RNA, Ribosomal/chemistry,classification Sequence Alignment Sequence Analysis, DNA Software
Chemicals
DNA Probes DNA, Ribosomal RNA, Bacterial RNA, Ribosomal
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Cole J R
Center for Microbial Ecology, Michigan State University, East Lansing, MI 48824-4320, USA. rdpstaff@msu.edu
Chai B
Farris R J
Wang Q
Kulam S A
McGarrell D M
Garrity G M
Tiedje J M
References (4)
4 references, click to expand
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
DOI
10.1093/nar/gki038
Email
rdpstaff@msu.edu
Published
2005-01-01
Pages
D294-6
Language
English
Region
England
NLM ID
0411011
PMCID
PMC539992
Subset
IM
External Links
PubMed source DOI: 10.1093/nar/gki038 PMC Full Text View journal details
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