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PMID: 15591358 Published · ppublish English Journal Article

HESAS: HERVs Expression and Structure Analysis System.

Bioinformatics (Oxford, England) ·Vol. 21 ·No. 8 ·2005-04-15 ·Pages 1699-700

Kim TH, Jeon YJ, Kim WY, Kim HS

Abstract

HESAS (HERVs Expression and Structure Analysis System) database was developed to understand the human endogenous retroviruses (HERVs) that have an effect on the expression of human functional genes. The database products are generated by the exon-based expressed sequence tag clustering and reconstructing of partial HERV structures that result from various mutations during primate evolution. The expression types were classified according to the existence of splicing, transcriptional start and polyadenylation signal sites. The database currently contains HERV information on 26,981 human genes of exon-intron structure. The HERV elements were inserted into 17,317 of these genes and linked to expression with 898 genes. http://www.primate.or.kr/HESAS CONTACT: khs307@pusan.ac.kr.

MeSH Terms
Algorithms Chromosome Mapping/methods Database Management Systems Databases, Nucleic Acid Endogenous Retroviruses/genetics Expressed Sequence Tags Genome, Human Humans Information Storage and Retrieval/methods Sequence Alignment/methods Sequence Analysis, DNA/methods Software
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Kim Tae-Hyung
PBBRC, Interdisciplinary Research Program of Bioinformatics, College of Natural Sciences, Pusan National University, Busan 609-735, Korea.
Jeon Yeo-Jin
Kim Woo-Yeon
Kim Heui-Soo
Article Info
Journal
Bioinformatics (Oxford, England)
Abbr.
Bioinformatics
ISSN
1367-4803
Published
2005-04-15
Epub
2004-00-10
Pages
1699-700
Language
English
Region
England
NLM ID
9808944
Subset
IM
Analysis Services
Analysis Services

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