Home LiteratureArticle Details
PMID: 15579708 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Comparing the linkage maps of the close relatives Arabidopsis lyrata and A. thaliana.

Genetics ·Vol. 168 ·No. 3 ·2004-11-00 ·Pages 1575-84

Kuittinen H, de Haan AA, Vogl C, Oikarinen S, Leppälä J, Koch M, Mitchell-Olds T, Langley CH, Savolainen O

Abstract

We have constructed a genetic map of Arabidopsis lyrata, a self-incompatible relative of the plant model species A. thaliana. A. lyrata is a diploid (n = 8) species that diverged from A. thaliana (n = 5) approximately 5 MYA. Mapping was conducted in a full-sib progeny of two unrelated F(1) hybrids between two European populations of A. lyrata ssp. petraea. We used the least-squares method of the Joinmap program for map construction. The gross chromosomal differences between the two species were most parsimoniously explained with three fusions, two reciprocal translocations, and one inversion. The total map length was 515 cM, and the distances were 12% larger than those between corresponding markers in the linkage map of A. thaliana. The 72 markers, consisting of microsatellites and gene-based markers, were spaced on average every 8 cM. Transmission ratio distortion was extensive, and most distortions were specific to each reciprocal cross, suggesting cytoplasmic interactions. We estimate locations and most probable genotype frequencies of transmission ratio distorting loci (TRDL) with a Bayesian method and discuss the possible reasons for the observed distortions.

MeSH Terms
Arabidopsis/genetics Biological Evolution Chromosome Mapping Crosses, Genetic Genetic Linkage Genetic Markers Translocation, Genetic
Chemicals
Genetic Markers
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Kuittinen Helmi
Department of Biology, University of Oulu, 90401 Oulu, Finland. helmi.kuittinen@oulu.fi
de Haan Anita A
Vogl Claus
Oikarinen Sami
Leppälä Johanna
Koch Marcus
Mitchell-Olds Tom
Langley Charles H
Savolainen Outi
References (36)
36 references, click to expand
  1. Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages.
    J Mol Evol. 1999 May;48(5):597-604 PMID: 10198125
  2. Arabidopsis-rice: will colinearity allow gene prediction across the eudicot-monocot divide?
    Genome Res. 1999 Sep;9(9):825-9 PMID: 10508840
  3. Contrasting patterns of nucleotide polymorphism at the alcohol dehydrogenase locus in the outcrossing Arabidopsis lyrata and the selfing Arabidopsis thaliana.
    Mol Biol Evol. 2000 Apr;17(4):645-55 PMID: 10742055
  4. An EST-enriched comparative map of Brassica oleracea and Arabidopsis thaliana.
    Genome Res. 2000 Jun;10(6):776-88 PMID: 10854410
  5. Multipoint mapping of viability and segregation distorting loci using molecular markers.
    Genetics. 2000 Jul;155(3):1439-47 PMID: 10880501
  6. Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny.
    Proc Natl Acad Sci U S A. 2000 Aug 1;97(16):9121-6 PMID: 10908680
  7. Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella.
    Plant J. 2000 Jul;23(1):55-62 PMID: 10929101
  8. Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae).
    Mol Biol Evol. 2000 Oct;17(10):1483-98 PMID: 11018155
  9. Arabidopsis species hybrids in the study of species differences and evolution of amphiploidy in plants.
    Plant Physiol. 2000 Dec;124(4):1605-14 PMID: 11115878
  10. The origins of genomic duplications in Arabidopsis.
    Science. 2000 Dec 15;290(5499):2114-7 PMID: 11118139
  11. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
    Nature. 2000 Dec 14;408(6814):796-815 PMID: 11130711
  12. Arabidopsis and Brassica comparative genomics: sequence, structure and gene content in the ABI-Rps2-Ck1 chromosomal segment and related regions.
    Genetics. 2001 Mar;157(3):1321-30 PMID: 11238417
  13. Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis, and Capsella genomes.
    Plant Cell. 2001 Apr;13(4):979-88 PMID: 11283350
  14. Asymmetrical crossing barriers in angiosperms.
    Proc Biol Sci. 2001 Apr 22;268(1469):861-7 PMID: 11345333
  15. Male sterility in plants: occurrence, determinism, significance and use.
    C R Acad Sci III. 2001 Jun;324(6):543-50 PMID: 11455877
  16. The evolution of postzygotic isolation: accumulating Dobzhansky-Muller incompatibilities.
    Evolution. 2001 Jun;55(6):1085-94 PMID: 11475044
  17. A genome-wide survey of reproductive barriers in an intraspecific hybrid.
    Genetics. 2001 Oct;159(2):883-92 PMID: 11606560
  18. A genetic map in the Mimulus guttatus species complex reveals transmission ratio distortion due to heterospecific interactions.
    Genetics. 2001 Dec;159(4):1701-16 PMID: 11779808
  19. Diverse variation of reproductive barriers in three intraspecific rice crosses.
    Genetics. 2002 Jan;160(1):313-22 PMID: 11805066
  20. Plant genome evolution: lessons from comparative genomics at the DNA level.
    Plant Mol Biol. 2002 Jan;48(1-2):21-37 PMID: 11860210
  21. The colinearity of the Sh2/A1 orthologous region in rice, sorghum and maize is interrupted and accompanied by genome expansion in the triticeae.
    Genetics. 2002 Mar;160(3):1153-62 PMID: 11901130
  22. Cross-species microsatellite markers for elucidating population genetic structure in Arabidopsis and Arabis (Brassicaeae).
    Mol Ecol. 2002 Mar;11(3):591-601 PMID: 11918792
  23. Intraspecific violation of genetic colinearity and its implications in maize.
    Proc Natl Acad Sci U S A. 2002 Jul 9;99(14):9573-8 PMID: 12060715
  24. Rates and patterns of molecular evolution in inbred and outbred Arabidopsis.
    Mol Biol Evol. 2002 Sep;19(9):1407-20 PMID: 12200469
  25. The hidden duplication past of Arabidopsis thaliana.
    Proc Natl Acad Sci U S A. 2002 Oct 15;99(21):13627-32 PMID: 12374856
  26. Effects of genotyping errors, missing values and segregation distortion in molecular marker data on the construction of linkage maps.
    Heredity (Edinb). 2003 Jan;90(1):33-8 PMID: 12522423
  27. Population genetics of tandem trypsin inhibitor genes in Arabidopsis species with contrasting ecology and life history.
    Mol Ecol. 2003 May;12(5):1287-99 PMID: 12694291
  28. Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana.
    Genetics. 2003 May;164(1):359-72 PMID: 12750346
  29. Comparative mapping between potato (Solanum tuberosum) and Arabidopsis thaliana reveals structurally conserved domains and ancient duplications in the potato genome.
    Plant J. 2003 May;34(4):529-41 PMID: 12753591
  30. GENETIC BASIS OF INBREEDING DEPRESSION IN ARABIS PETRAEA.
    Evolution. 1999 Oct;53(5):1354-1365 PMID: 28565542
  31. Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization.
    Genetics. 1994 Oct;138(2):499-510 PMID: 7828831
  32. Assignment of 30 microsatellite loci to the linkage map of Arabidopsis.
    Genomics. 1994 Jan 1;19(1):137-44 PMID: 8188214
  33. Comparative genome mapping in Brassica.
    Genetics. 1996 Dec;144(4):1903-10 PMID: 8978073
  34. Evolution of microsatellites in Arabis petraea and Arabis lyrata, outcrossing relatives of Arabidopsis thaliana.
    Mol Biol Evol. 1997 Mar;14(3):220-9 PMID: 9066790
  35. Genetics of adaptive radiation in Hawaiian and Cook Islands species of Tetramolopium (Asteraceae). II. Genetic linkage map and its implications for interspecific breeding barriers.
    Genetics. 1998 Nov;150(3):1209-16 PMID: 9799272
  36. Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements.
    Genetics. 1998 Nov;150(3):1217-28 PMID: 9799273
Article Info
Journal
Genetics
Abbr.
Genetics
ISSN
0016-6731
DOI
10.1534/genetics.103.022343
Email
helmi.kuittinen@oulu.fi
Published
2004-11-00
Pages
1575-84
Language
English
Region
United States
NLM ID
0374636
PMCID
PMC1448766
Subset
IM
External Links
PubMed source DOI: 10.1534/genetics.103.022343 PMC Full Text View journal details
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com

Copyright © 2026.Genelibs Jinan Honghui Biotechnology Co., Ltd. 鲁ICP备20007159号-2