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PMID: 15572777 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The Uppsala Electron-Density Server.

Acta crystallographica. Section D, Biological crystallography ·Vol. 60 ·No. Pt 12 Pt 1 ·2004-12-00 ·Pages 2240-9

Kleywegt GJ, Harris MR, Zou JY, Taylor TC, Wählby A, Jones TA

Abstract

The Uppsala Electron Density Server (EDS; http://eds.bmc.uu.se/) is a web-based facility that provides access to electron-density maps and statistics concerning the fit of crystal structures and their maps. Maps are available for approximately 87% of the crystallographic Protein Data Bank (PDB) entries for which structure factors have been deposited and for which straightforward map calculations succeed in reproducing the published R value to within five percentage points. Here, an account is provided of the methods that are used to generate the information contained in the server. Some of the problems that are encountered in the map-generation process as well as some spin-offs of the project are also discussed.

MeSH Terms
Computational Biology Crystallography, X-Ray Databases, Protein Electrons Internet Proteins/chemistry Reproducibility of Results Software Temperature
Chemicals
Proteins
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Kleywegt Gerard J
Department of Cell and Molecular Biology, Uppsala University, Biomedical Centre, Box 596, SE-751 24 Uppsala, Sweden. gerard@xray.bmc.uu.se
Harris Mark R
Zou Jin Yu
Taylor Thomas C
Wählby Anders
Jones T Alwyn
Article Info
Journal
Acta crystallographica. Section D, Biological crystallography
Abbr.
Acta Crystallogr D Biol Crystallogr
ISSN
0907-4449
Published
2004-12-00
Epub
2004-00-26
Pages
2240-9
Language
English
Region
United States
NLM ID
9305878
Subset
IM
Analysis Services
Analysis Services

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