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PMID: 15509786 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Architectural role of mitochondrial transcription factor A in maintenance of human mitochondrial DNA.

Molecular and cellular biology ·Vol. 24 ·No. 22 ·2004-11-00 ·Pages 9823-34

Kanki T, Ohgaki K, Gaspari M, Gustafsson CM, Fukuoh A, Sasaki N, Hamasaki N, Kang D

Abstract

Mitochondrial transcription factor A (TFAM), a transcription factor for mitochondrial DNA (mtDNA) that also possesses the property of nonspecific DNA binding, is essential for maintenance of mtDNA. To clarify the role of TFAM, we repressed the expression of endogenous TFAM in HeLa cells by RNA interference. The amount of TFAM decreased maximally to about 15% of the normal level at day 3 after RNA interference and then recovered gradually. The amount of mtDNA changed closely in parallel with the daily change in TFAM while in organello transcription of mtDNA at day 3 was maintained at about 50% of the normal level. TFAM lacking its C-terminal 25 amino acids (TFAM-DeltaC) marginally activated transcription in vitro. When TFAM-DeltaC was expressed at levels comparable to those of endogenous TFAM in HeLa cells, mtDNA increased twofold, suggesting that TFAM-DeltaC is as competent in maintaining mtDNA as endogenous TFAM under these conditions. The in organello transcription of TFAM-DeltaC-expressing cells was no more than that in the control. Thus, the mtDNA amount is finely correlated with the amount of TFAM but not with the transcription level. We discuss an architectural role for TFAM in the maintenance of mtDNA in addition to its role in transcription activation.

MeSH Terms
Animals Base Sequence DNA, Mitochondrial/genetics,metabolism DNA-Binding Proteins/chemistry,genetics,metabolism Gene Expression HeLa Cells High Mobility Group Proteins Humans In Vitro Techniques Mice Mitochondria/metabolism Mitochondrial Proteins/chemistry,genetics,metabolism Nuclear Proteins/chemistry,genetics,metabolism RNA Interference RNA, Small Interfering/genetics Recombinant Proteins/chemistry,genetics,metabolism Sequence Deletion Transcription Factors/chemistry,genetics,metabolism Transcription, Genetic
Chemicals
DNA, Mitochondrial DNA-Binding Proteins High Mobility Group Proteins Mitochondrial Proteins Nuclear Proteins RNA, Small Interfering Recombinant Proteins TFAM protein, human Tfam protein, mouse Transcription Factors mitochondrial transcription factor A
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Kanki Tomotake
Department of Clinical Chemistry and Laboratory Medicine, Kyushu University Graduate School of Medical Sciences, 3-1-1 Maidashi, Higashi-ku, Fukuoka 812-8582, Japan.
Ohgaki Kippei
Gaspari Martina
Gustafsson Claes M
Fukuoh Atsushi
Sasaki Narie
Hamasaki Naotaka
Kang Dongchon
References (39)
39 references, click to expand
  1. Human mitochondrial DNA is packaged with TFAM.
    Nucleic Acids Res. 2003 Mar 15;31(6):1640-5 PMID: 12626705
  2. Rearrangements of human mitochondrial DNA (mtDNA): new insights into the regulation of mtDNA copy number and gene expression.
    Mol Biol Cell. 2000 Apr;11(4):1471-85 PMID: 10749943
  3. Human mitochondrial transcription factor B1 interacts with the C-terminal activation region of h-mtTFA and stimulates transcription independently of its RNA methyltransferase activity.
    Mol Cell Biol. 2003 Aug;23(16):5816-24 PMID: 12897151
  4. Functional domains of chicken mitochondrial transcription factor A for the maintenance of mitochondrial DNA copy number in lymphoma cell line DT40.
    J Biol Chem. 2003 Aug 15;278(33):31149-58 PMID: 12759347
  5. Import of mitochondrial transcription factor A (TFAM) into rat liver mitochondria stimulates transcription of mitochondrial DNA.
    Nucleic Acids Res. 2003 Sep 1;31(17):5039-47 PMID: 12930954
  6. Glom is a novel mitochondrial DNA packaging protein in Physarum polycephalum and causes intense chromatin condensation without suppressing DNA functions.
    Mol Biol Cell. 2003 Dec;14(12):4758-69 PMID: 12960433
  7. Mammalian mitochondrial DNA replicates bidirectionally from an initiation zone.
    J Biol Chem. 2003 Dec 19;278(51):50961-9 PMID: 14506235
  8. DNA and RNA binding by the mitochondrial lon protease is regulated by nucleotide and protein substrate.
    J Biol Chem. 2004 Apr 2;279(14):13902-10 PMID: 14739292
  9. Association of a protein structure of probable membrane derivation with HeLa cell mitochondrial DNA near its origin of replication.
    Proc Natl Acad Sci U S A. 1977 Apr;74(4):1348-52 PMID: 266177
  10. Characterization of a histone-like protein extracted from yeast mitochondria.
    Proc Natl Acad Sci U S A. 1979 Sep;76(9):4265-9 PMID: 228293
  11. DNA-protein interactions in the Drosophila melanogaster mitochondrial genome as deduced from trimethylpsoralen crosslinking patterns.
    Proc Natl Acad Sci U S A. 1980 Jul;77(7):4118-22 PMID: 6776522
  12. Coupled leading- and lagging-strand synthesis of mammalian mitochondrial DNA.
    Cell. 2000 Mar 3;100(5):515-24 PMID: 10721989
  13. Regulation of mitochondrial D-loops by transcription factor A and single-stranded DNA-binding protein.
    EMBO Rep. 2002 May;3(5):451-6 PMID: 11964388
  14. Binding of human mitochondrial transcription factor A, an HMG box protein, to a four-way DNA junction.
    Biochem Biophys Res Commun. 2000 May 10;271(2):492-8 PMID: 10799324
  15. In organello formaldehyde crosslinking of proteins to mtDNA: identification of bifunctional proteins.
    Proc Natl Acad Sci U S A. 2000 Jul 5;97(14):7772-7 PMID: 10869431
  16. Drosophila mitochondrial transcription factor A (d-TFAM) is dispensable for the transcription of mitochondrial DNA in Kc167 cells.
    Biochem J. 2001 Mar 1;354(Pt 2):243-8 PMID: 11171100
  17. Human mitochondrial DNA deletions associated with mutations in the gene encoding Twinkle, a phage T7 gene 4-like protein localized in mitochondria.
    Nat Genet. 2001 Jul;28(3):223-31 PMID: 11431692
  18. A human mitochondrial transcription factor is related to RNA adenine methyltransferases and binds S-adenosylmethionine.
    Mol Cell Biol. 2002 Feb;22(4):1116-25 PMID: 11809803
  19. Modulation of mitochondrial transcription in response to mtDNA depletion and repletion in HeLa cells.
    Nucleic Acids Res. 2002 May 1;30(9):1929-34 PMID: 11972329
  20. Mitochondrial transcription factors B1 and B2 activate transcription of human mtDNA.
    Nat Genet. 2002 Jul;31(3):289-94 PMID: 12068295
  21. Biased incorporation of ribonucleotides on the mitochondrial L-strand accounts for apparent strand-asymmetric DNA replication.
    Cell. 2002 Nov 15;111(4):495-505 PMID: 12437923
  22. In situ photochemical crosslinking of HeLa cell mitochondrial DNA by a psoralen derivative reveals a protected region near the origin of replication.
    Nucleic Acids Res. 1981 Nov 25;9(22):6017-30 PMID: 6273818
  23. DNA-protein interactions in the Drosophila virilis mitochondrial chromosome.
    Nucleic Acids Res. 1984 Feb 24;12(4):1991-9 PMID: 6322130
  24. Characterization of DNA-protein complexes from the mitochondria of Xenopus laevis oocytes.
    Exp Cell Res. 1985 Mar;157(1):207-17 PMID: 3972011
  25. Isolation of morphologically intact mitochondrial nucleoids from the yeast, Saccharomyces cerevisiae.
    J Cell Sci. 1987 Nov;88 ( Pt 4):431-9 PMID: 3332668
  26. Purification and characterization of human mitochondrial transcription factor 1.
    Mol Cell Biol. 1988 Aug;8(8):3496-509 PMID: 3211148
  27. Context effects and inefficient initiation at non-AUG codons in eucaryotic cell-free translation systems.
    Mol Cell Biol. 1989 Nov;9(11):5073-80 PMID: 2601709
  28. DNA wrapping and bending by a mitochondrial high mobility group-like transcriptional activator protein.
    J Biol Chem. 1992 Feb 15;267(5):3358-67 PMID: 1737790
  29. DNA binding properties of an HMG1-related protein from yeast mitochondria.
    J Biol Chem. 1992 Feb 15;267(5):3368-74 PMID: 1737791
  30. A human mitochondrial transcriptional activator can functionally replace a yeast mitochondrial HMG-box protein both in vivo and in vitro.
    Mol Cell Biol. 1993 Mar;13(3):1951-61 PMID: 8441424
  31. Functional complementarity between the HMG1-like yeast mitochondrial histone HM and the bacterial histone-like protein HU.
    J Biol Chem. 1993 Jun 15;268(17):12758-63 PMID: 8509411
  32. Addition of a 29 residue carboxyl-terminal tail converts a simple HMG box-containing protein into a transcriptional activator.
    J Mol Biol. 1995 May 26;249(1):11-28 PMID: 7776365
  33. In organello RNA synthesis system from mammalian liver and brain.
    Methods Enzymol. 1996;264:50-7 PMID: 8965722
  34. Mitochondrial DNA maintenance in vertebrates.
    Annu Rev Biochem. 1997;66:409-35 PMID: 9242913
  35. p32 protein, a splicing factor 2-associated protein, is localized in mitochondrial matrix and is functionally important in maintaining oxidative phosphorylation.
    J Biol Chem. 1997 Sep 26;272(39):24363-70 PMID: 9305894
  36. Mitochondrial transcription factor A is necessary for mtDNA maintenance and embryogenesis in mice.
    Nat Genet. 1998 Mar;18(3):231-6 PMID: 9500544
  37. Functions of the high mobility group protein, Abf2p, in mitochondrial DNA segregation, recombination and copy number in Saccharomyces cerevisiae.
    Genetics. 1998 Apr;148(4):1763-76 PMID: 9581629
  38. Initiation of mitochondrial DNA replication by transcription and R-loop processing.
    J Biol Chem. 1998 Nov 13;273(46):30614-21 PMID: 9804833
  39. Composition and dynamics of human mitochondrial nucleoids.
    Mol Biol Cell. 2003 Apr;14(4):1583-96 PMID: 12686611
Article Info
Journal
Molecular and cellular biology
Abbr.
Mol Cell Biol
ISSN
0270-7306
Published
2004-11-00
Pages
9823-34
Language
English
Region
United States
NLM ID
8109087
PMCID
PMC525493
Subset
IM
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