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PMID: 15479249 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Acetoclastic and hydrogenotrophic methane production and methanogenic populations in an acidic West-Siberian peat bog.

Environmental microbiology ·Vol. 6 ·No. 11 ·2004-11-00 ·Pages 1159-73

Kotsyurbenko OR, Chin KJ, Glagolev MV, Stubner S, Simankova MV, Nozhevnikova AN, Conrad R

Abstract

Sites in the West Siberian peat bog 'Bakchar' were acidic (pH 4.2-4.8), low in nutrients, and emitted CH4 at rates of 0.2-1.5 mmol m(-2) h(-1). The vertical profile of delta13CH4 and delta13CO2 dissolved in the porewater indicated increasing isotope fractionation and thus increasing contribution of H2/CO2-dependent methanogenesis with depth. The anaerobic microbial community at 30-50 cm below the water table produced CH4 with optimum activity at 20-25 degrees C and pH 5.0-5.5 respectively. Inhibition of methanogenesis with 2-bromo-ethane sulphonate showed that acetate, phenyl acetate, phenyl propionate and caproate were important intermediates in the degradation pathway of organic matter to CH4. Further degradation of these intermediates indicated that 62-72% of the CH4 was ultimately derived from acetate, the remainder from H2/CO2. Turnover times of [2-14C]acetate were on the order of 2 days (15, 25 degrees C) and accounted for 60-65% of total CH4 production. Conversion of 14CO2 to 14CH4 accounted for 35-43% of total CH4 production. These results showed that acetoclastic and hydrogenotrophic methanogenesis operated closely at a ratio of approximately 2 : 1 irrespective of the incubation temperature (4, 15 and 25 degrees C). The composition of the archaeal community was determined in the peat samples by terminal restriction fragment length polymorphism (T-RFLP) analysis and sequencing of amplified SSU rRNA gene fragments, and showed that members of Methanomicrobiaceae, Methanosarcinaceae and Rice cluster II (RC-II) were present. Other, presumably non-methanogenic archaeal clusters (group III, RC-IV, RC-V, RC-VI) were also detected. Fluorescent in situ hybridization (FISH) showed that the number of Bacteria decreased (from 24 x 10(7) to 4 x 10(7) cells per gram peat) with depth (from 5 to 55 cm below the water table), whereas the numbers of Archaea slightly increased (from 1 x 10(7) to 2 x 10(7) cells per gram peat). Methanosarcina spp. accounted for about half of the archaeal cells. Our results show that both hydrogenotrophic and acetoclastic methanogenesis are an integral part of the CH4-producing pathway in acidic peat and were represented by appropriate methanogenic populations.

MeSH Terms
Acetic Acid/metabolism Alkanesulfonic Acids/pharmacology Bacteria/genetics,isolation & purification Caproates/metabolism Carbon Dioxide/metabolism DNA, Archaeal/chemistry,isolation & purification DNA, Ribosomal/chemistry,isolation & purification Enzyme Inhibitors/pharmacology Euryarchaeota/classification,genetics,isolation & purification,metabolism Genes, rRNA Hydrogen/metabolism Hydrogen-Ion Concentration In Situ Hybridization, Fluorescence Methane/metabolism Methanomicrobiaceae/classification,genetics,isolation & purification,metabolism Methanosarcina/classification,genetics,isolation & purification,metabolism Methanosarcinaceae/classification,genetics,isolation & purification,metabolism Molecular Sequence Data Phenylacetates/metabolism Phenylpropionates/metabolism Phylogeny Polymorphism, Restriction Fragment Length RNA, Archaeal/genetics RNA, Ribosomal, 16S/genetics Sequence Analysis, DNA Siberia Soil Microbiology Temperature
Chemicals
Alkanesulfonic Acids Caproates DNA, Archaeal DNA, Ribosomal Enzyme Inhibitors Phenylacetates Phenylpropionates RNA, Archaeal RNA, Ribosomal, 16S Carbon Dioxide 2-bromoethanesulfonic acid Hydrogen phenylacetic acid Methane Acetic Acid
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Kotsyurbenko Oleg R
Max-Planck-Institute for Terrestrial Microbiology, Karl-von-Frisch-Str, 35043 Marburg, Germany.
Chin Kuk-Jeong
Glagolev Mikhail V
Stubner Stephan
Simankova Maria V
Nozhevnikova Ala N
Conrad Ralf
Article Info
Journal
Environmental microbiology
Abbr.
Environ Microbiol
ISSN
1462-2912
Published
2004-11-00
Pages
1159-73
Language
English
Region
England
NLM ID
100883692
Subset
IM
Databases
GENBANK
AJ606247, AJ606248, AJ606249, AJ606250, AJ606251, AJ606252, AJ606253, AJ606254, AJ606255, AJ606256, AJ606257, AJ606258, AJ606259, AJ606260, AJ606261, AJ606262, AJ606263, AJ606264, AJ606265, AJ606266, AJ606267, AJ606268, AJ606269, AJ606270, AJ606271, AJ606272, AJ606273, AJ606274, AJ606275, AJ606276, AJ606277, AJ606278, AJ606279, AJ606280, AJ606281, AJ606282, AJ606283, AJ606284, AJ606285, AJ606286, AJ606287, AJ606288, AJ606289, AJ606290, AJ606291, AJ606292, AJ606293
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