Home LiteratureArticle Details
PMID: 15377760 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S.

Divergent roles of a pair of homologous jumonji/zinc-finger-class transcription factor proteins in the regulation of Arabidopsis flowering time.

The Plant cell ·Vol. 16 ·No. 10 ·2004-10-00 ·Pages 2601-13

Noh B, Lee SH, Kim HJ, Yi G, Shin EA, Lee M, Jung KJ, Doyle MR, Amasino RM, Noh YS

Abstract

Flowering in Arabidopsis thaliana is controlled by multiple pathways, including the photoperiod pathway and the FLOWERING LOCUS C (FLC)-dependent pathway. Here, we report that a pair of related jumonji-class transcription factors, EARLY FLOWERING 6 (ELF6) and RELATIVE OF EARLY FLOWERING 6 (REF6), play divergent roles in the regulation of Arabidopsis flowering. ELF6 acts as a repressor in the photoperiod pathway, whereas REF6, which has the highest similarity to ELF6, is an FLC repressor. Ectopic expression studies and expression pattern analyses show that ELF6 and REF6 have different cellular roles and are also regulated differentially despite their sequence similarities. Repression of FLC expression by REF6 accompanies histone modifications in FLC chromatin, indicating that the transcriptional regulatory activity of this class of proteins includes chromatin remodeling. This report demonstrates the in vivo functions of this class of proteins in higher eukaryotes.

MeSH Terms
Amino Acid Sequence Arabidopsis/physiology Arabidopsis Proteins/chemistry,genetics,physiology Base Sequence DNA Primers Molecular Sequence Data Mutation Reverse Transcriptase Polymerase Chain Reaction Sequence Homology, Amino Acid Transcription Factors/chemistry,genetics,physiology Transcription, Genetic/genetics
Chemicals
Arabidopsis Proteins DNA Primers Transcription Factors
Authors & Affiliations
10 authors, click to expand affiliations / ORCID
Noh Bosl
Kumho Life and Environmental Science Laboratory, Puk-Gu, Kwangju 500-712, Korea. noh@kkpc.com <noh@kkpc.com>
Lee Seung-Hee
Kim Hyun-Jin
Yi Gibum
Shin Eun-Ah
Lee Mirha
Jung Kyung-Ja
Doyle Mark R
Amasino Richard M
Noh Yoo-Sun
References (57)
57 references, click to expand
  1. CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis.
    Nature. 2001 Apr 26;410(6832):1116-20 PMID: 11323677
  2. Evidence of domain swapping within the jumonji family of transcription factors.
    Trends Biochem Sci. 2000 Jun;25(6):274-6 PMID: 10838566
  3. Molecular analysis of FRIGIDA, a major determinant of natural variation in Arabidopsis flowering time.
    Science. 2000 Oct 13;290(5490):344-7 PMID: 11030654
  4. Histone acetylation: a switch between repressive and permissive chromatin. Second in review series on chromatin dynamics.
    EMBO Rep. 2002 Mar;3(3):224-9 PMID: 11882541
  5. FPA, a gene involved in floral induction in Arabidopsis, encodes a protein containing RNA-recognition motifs.
    Plant Cell. 2001 Jun;13(6):1427-36 PMID: 11402170
  6. The SOC1 MADS-box gene integrates vernalization and gibberellin signals for flowering in Arabidopsis.
    Plant J. 2003 Sep;35(5):613-23 PMID: 12940954
  7. Multiple roles of Arabidopsis VRN1 in vernalization and flowering time control.
    Science. 2002 Jul 12;297(5579):243-6 PMID: 12114624
  8. Functional analyses of the flowering time gene OsMADS50, the putative SUPPRESSOR OF OVEREXPRESSION OF CO 1/AGAMOUS-LIKE 20 (SOC1/AGL20) ortholog in rice.
    Plant J. 2004 Jun;38(5):754-64 PMID: 15144377
  9. The FLF MADS box gene: a repressor of flowering in Arabidopsis regulated by vernalization and methylation.
    Plant Cell. 1999 Mar;11(3):445-58 PMID: 10072403
  10. GENETIC CONTROL OF FLOWERING TIME IN ARABIDOPSIS.
    Annu Rev Plant Physiol Plant Mol Biol. 1998 Jun;49:345-370 PMID: 15012238
  11. JmjC: cupin metalloenzyme-like domains in jumonji, hairless and phospholipase A2beta.
    Trends Biochem Sci. 2001 Jan;26(1):7-9 PMID: 11165500
  12. early in short days 4, a mutation in Arabidopsis that causes early flowering and reduces the mRNA abundance of the floral repressor FLC.
    Development. 2002 Dec;129(23):5349-61 PMID: 12403707
  13. Integration of floral inductive signals in Arabidopsis.
    Nature. 2000 Apr 20;404(6780):889-92 PMID: 10786797
  14. Terminal flower2, an Arabidopsis homolog of heterochromatin protein1, counteracts the activation of flowering locus T by constans in the vascular tissues of leaves to regulate flowering time.
    Plant Cell. 2003 Dec;15(12):2856-65 PMID: 14630968
  15. Floral dip: a simplified method for Agrobacterium-mediated transformation of Arabidopsis thaliana.
    Plant J. 1998 Dec;16(6):735-43 PMID: 10069079
  16. Regulation of flowering time by light quality.
    Nature. 2003 Jun 19;423(6942):881-5 PMID: 12815435
  17. PIE1, an ISWI family gene, is required for FLC activation and floral repression in Arabidopsis.
    Plant Cell. 2003 Jul;15(7):1671-82 PMID: 12837955
  18. Isolation of LUMINIDEPENDENS: a gene involved in the control of flowering time in Arabidopsis.
    Plant Cell. 1994 Jan;6(1):75-83 PMID: 7907507
  19. Regulation of flowering time by FVE, a retinoblastoma-associated protein.
    Nat Genet. 2004 Feb;36(2):162-6 PMID: 14745447
  20. Control of flowering time: interacting pathways as a basis for diversity.
    Plant Cell. 2002;14 Suppl:S111-30 PMID: 12045273
  21. Photoreceptor regulation of CONSTANS protein in photoperiodic flowering.
    Science. 2004 Feb 13;303(5660):1003-6 PMID: 14963328
  22. Identification of a MADS-box gene, FLOWERING LOCUS M, that represses flowering.
    Plant J. 2001 Apr;26(2):229-36 PMID: 11389763
  23. Efficient isolation and mapping of Arabidopsis thaliana T-DNA insert junctions by thermal asymmetric interlaced PCR.
    Plant J. 1995 Sep;8(3):457-63 PMID: 7550382
  24. The language of covalent histone modifications.
    Nature. 2000 Jan 6;403(6765):41-5 PMID: 10638745
  25. Mechanisms of floral repression in Arabidopsis.
    Curr Opin Plant Biol. 2003 Feb;6(1):29-35 PMID: 12495748
  26. The need for winter in the switch to flowering.
    Annu Rev Genet. 2003;37:371-92 PMID: 14616066
  27. Genetic interactions between FLM and other flowering-time genes in Arabidopsis thaliana.
    Plant Mol Biol. 2003 Jul;52(5):915-22 PMID: 14558654
  28. The AGAMOUS-LIKE 20 MADS domain protein integrates floral inductive pathways in Arabidopsis.
    Genes Dev. 2000 Sep 15;14(18):2366-76 PMID: 10995392
  29. Adaptation of photoperiodic control pathways produces short-day flowering in rice.
    Nature. 2003 Apr 17;422(6933):719-22 PMID: 12700762
  30. EARLY FLOWERING 5 acts as a floral repressor in Arabidopsis.
    Plant J. 2004 May;38(4):664-72 PMID: 15125772
  31. Comparative biology comes into bloom: genomic and genetic comparison of flowering pathways in rice and Arabidopsis.
    Curr Opin Plant Biol. 2003 Apr;6(2):113-20 PMID: 12667866
  32. Gibberellin Is Required for Flowering in Arabidopsis thaliana under Short Days.
    Plant Physiol. 1992 Sep;100(1):403-8 PMID: 16652976
  33. Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3.
    Nature. 2004 Jan 8;427(6970):159-64 PMID: 14712276
  34. FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering.
    Plant Cell. 1999 May;11(5):949-56 PMID: 10330478
  35. Distinct roles of CONSTANS target genes in reproductive development of Arabidopsis.
    Science. 2000 Jun 2;288(5471):1613-6 PMID: 10834834
  36. Prediction of complete gene structures in human genomic DNA.
    J Mol Biol. 1997 Apr 25;268(1):78-94 PMID: 9149143
  37. A pair of related genes with antagonistic roles in mediating flowering signals.
    Science. 1999 Dec 3;286(5446):1960-2 PMID: 10583960
  38. AGL24 acts as a promoter of flowering in Arabidopsis and is positively regulated by vernalization.
    Plant J. 2003 Mar;33(5):867-74 PMID: 12609028
  39. Control of circadian rhythms and photoperiodic flowering by the Arabidopsis GIGANTEA gene.
    Science. 1999 Sep 3;285(5433):1579-82 PMID: 10477524
  40. The Arabidopsis flowering-time gene LUMINIDEPENDENS is expressed primarily in regions of cell proliferation and encodes a nuclear protein that regulates LEAFY expression.
    Plant J. 1999 Apr;18(2):195-203 PMID: 10363371
  41. Reciprocal control of flowering time by OsSOC1 in transgenic Arabidopsis and by FLC in transgenic rice.
    Plant Biotechnol J. 2003 Sep;1(5):361-9 PMID: 17166135
  42. A knowledge base for predicting protein localization sites in eukaryotic cells.
    Genomics. 1992 Dec;14(4):897-911 PMID: 1478671
  43. Functional significance of the alternative transcript processing of the Arabidopsis floral promoter FCA.
    Plant Cell. 2002 Apr;14(4):877-88 PMID: 11971142
  44. A novel jmjC domain protein modulates heterochromatization in fission yeast.
    Mol Cell Biol. 2003 Jun;23(12):4356-70 PMID: 12773576
  45. GIGANTEA: a circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membrane-spanning domains.
    EMBO J. 1999 Sep 1;18(17):4679-88 PMID: 10469647
  46. Arabidopsis, the Rosetta stone of flowering time?
    Science. 2002 Apr 12;296(5566):285-9 PMID: 11951029
  47. Analysis of the Arabidopsis MADS AFFECTING FLOWERING gene family: MAF2 prevents vernalization by short periods of cold.
    Plant Cell. 2003 May;15(5):1159-69 PMID: 12724541
  48. Regulation of flowering time by histone acetylation in Arabidopsis.
    Science. 2003 Dec 5;302(5651):1751-4 PMID: 14593187
  49. The early-flowering mutant efs is involved in the autonomous promotion pathway of Arabidopsis thaliana.
    Development. 1999 Nov;126(21):4763-70 PMID: 10518493
  50. Overexpression of a novel class of gibberellin 2-oxidases decreases gibberellin levels and creates dwarf plants.
    Plant Cell. 2003 Jan;15(1):151-63 PMID: 12509528
  51. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice.
    Nucleic Acids Res. 1994 Nov 11;22(22):4673-80 PMID: 7984417
  52. Vernalization requires epigenetic silencing of FLC by histone methylation.
    Nature. 2004 Jan 8;427(6970):164-7 PMID: 14712277
  53. Multidrug resistance-like genes of Arabidopsis required for auxin transport and auxin-mediated development.
    Plant Cell. 2001 Nov;13(11):2441-54 PMID: 11701880
  54. Loss of FLOWERING LOCUS C activity eliminates the late-flowering phenotype of FRIGIDA and autonomous pathway mutations but not responsiveness to vernalization.
    Plant Cell. 2001 Apr;13(4):935-41 PMID: 11283346
  55. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
    Nucleic Acids Res. 1997 Sep 1;25(17):3389-402 PMID: 9254694
  56. Dependence of heterochromatic histone H3 methylation patterns on the Arabidopsis gene DDM1.
    Science. 2002 Sep 13;297(5588):1871-3 PMID: 12077425
  57. SMART: a web-based tool for the study of genetically mobile domains.
    Nucleic Acids Res. 2000 Jan 1;28(1):231-4 PMID: 10592234
Article Info
Journal
The Plant cell
Abbr.
Plant Cell
ISSN
1040-4651
Published
2004-10-00
Epub
2004-00-17
Pages
2601-13
Language
English
Region
England
NLM ID
9208688
PMCID
PMC520958
Subset
IM
Databases
GENBANK
AY664499, AY664500
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com