Home LiteratureArticle Details
PMID: 15340836 Published · ppublish English Comparative Study Journal Article Research Support, Non-U.S. Gov't

Comparative mapping between Medicago sativa and Pisum sativum.

Molecular genetics and genomics : MGG ·Vol. 272 ·No. 3 ·2004-10-00 ·Pages 235-46

Kaló P, Seres A, Taylor SA, Jakab J, Kevei Z, Kereszt A, Endre G, Ellis TH, Kiss GB

Abstract

Comparative genome analysis has been performed between alfalfa (Medicago sativa) and pea (Pisum sativum), species which represent two closely related tribes of the subfamily Papilionoideae with different basic chromosome numbers. The positions of genes on the most recent linkage map of diploid alfalfa were compared to those of homologous loci on the combined genetic map of pea to analyze the degree of co-linearity between their linkage groups. In addition to using unique genes, analysis of the map positions of multicopy (homologous) genes identified syntenic homologs (characterized by similar positions on the maps) and pinpointed the positions of non-syntenic homologs. The comparison revealed extensive conservation of gene order between alfalfa and pea. However, genetic rearrangements (due to breakage and reunion) were localized which can account for the difference in chromosome number (8 for alfalfa and 7 for pea). Based on these genetic events and our increasing knowledge of the genomic structure of pea, it was concluded that the difference in genome size between the two species (the pea genome is 5- to 10-fold larger than that of alfalfa) is not a consequence of genome duplication in pea. The high degree of synteny observed between pea and Medicago loci makes further map-based cloning of pea genes based on the genome resources now available for M. truncatula a promising strategy.

MeSH Terms
Base Sequence DNA Primers DNA, Complementary Gene Duplication Genetic Linkage Medicago sativa/genetics Peas/genetics
Chemicals
DNA Primers DNA, Complementary
Authors & Affiliations
9 authors, click to expand affiliations / ORCID
Kaló P
Institute of Genetics, Agricultural Biotechnology Center, Szent-Györgyi A. u. 4, 2100 Gödöllo, Hungary.
Seres A
Taylor S A
Jakab J
Kevei Z
Kereszt A
Endre G
Ellis T H N
Kiss G B
References (51)
51 references, click to expand
  1. Synteny conservation and chromosome rearrangements during mammalian evolution.
    Genetics. 1997 Sep;147(1):289-96 PMID: 9286688
  2. UNIFOLIATA regulates leaf and flower morphogenesis in pea.
    Curr Biol. 1997 Aug 1;7(8):581-7 PMID: 9259553
  3. Stress responses in alfalfa (Medicago sativa L.) 12. Sequence analysis of phenylalanine ammonia-lyase (PAL) cDNA clones and appearance of PAL transcripts in elicitor-treated cell cultures and developing plants.
    Plant Mol Biol. 1991 Sep;17(3):415-29 PMID: 1715786
  4. Identification and genetic regulation of the chalcone synthase multigene family in pea.
    Plant Cell. 1990 Mar;2(3):185-94 PMID: 2152111
  5. Linkage maps in pea.
    Genetics. 1992 Mar;130(3):649-63 PMID: 1551583
  6. High density molecular linkage maps of the tomato and potato genomes.
    Genetics. 1992 Dec;132(4):1141-60 PMID: 1360934
  7. Development of an RFLP map in diploid alfalfa.
    Theor Appl Genet. 1993 Apr;86(2-3):329-32 PMID: 24193478
  8. The relationship between genetic and cytogenetic maps of pea. II. Physical maps of linkage mapping populations.
    Genome. 1997 Oct;40(5):755-69 PMID: 18464863
  9. Conservation of gene repertoire but not gene order in pepper and tomato.
    Proc Natl Acad Sci U S A. 1988 Sep;85(17):6419-23 PMID: 16593975
  10. Purification and primary amino acid sequence of the L subunit of glycine decarboxylase. Evidence for a single lipoamide dehydrogenase in plant mitochondria.
    J Biol Chem. 1992 Apr 15;267(11):7745-50 PMID: 1560008
  11. Construction of a basic genetic map for alfalfa using RFLP, RAPD, isozyme and morphological markers.
    Mol Gen Genet. 1993 Apr;238(1-2):129-37 PMID: 8097555
  12. Detection of polymorphisms of human DNA by gel electrophoresis as single-strand conformation polymorphisms.
    Proc Natl Acad Sci U S A. 1989 Apr;86(8):2766-70 PMID: 2565038
  13. The Arabidopsis genome sequence as a tool for genome analysis in Brassicaceae. A comparison of the Arabidopsis and Capsella rubella genomes.
    Plant Physiol. 2004 Jun;135(2):735-44 PMID: 15208421
  14. Comparative genome analysis reveals extensive conservation of genome organisation for Arabidopsis thaliana and Capsella rubella.
    Plant J. 2000 Jul;23(1):55-62 PMID: 10929101
  15. Nodule-expressed Cyp15a cysteine protease genes map to syntenic genome regions in Pisum and Medicago spp.
    Mol Plant Microbe Interact. 2000 Jul;13(7):715-23 PMID: 10875332
  16. Grass genomes.
    Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):1975-8 PMID: 9482817
  17. Estimating genome conservation between crop and model legume species.
    Proc Natl Acad Sci U S A. 2004 Oct 26;101(43):15289-94 PMID: 15489274
  18. Cloning of the gene (gdcH) encoding H-protein, a component of the glycine decarboxylase complex of pea (Pisum sativum L.).
    Biochem J. 1992 Sep 1;286 ( Pt 2):627-30 PMID: 1530594
  19. Integration of the FISH pachytene and genetic maps of Medicago truncatula.
    Plant J. 2001 Jul;27(1):49-58 PMID: 11489182
  20. Comparative genetics in the grasses.
    Plant Mol Biol. 1997 Sep;35(1-2):3-15 PMID: 9291955
  21. Comparative genetics in the grasses.
    Proc Natl Acad Sci U S A. 1998 Mar 3;95(5):1971-4 PMID: 9482816
  22. Colinearity and gene density in grass genomes.
    Trends Plant Sci. 2000 Jun;5(6):246-51 PMID: 10838615
  23. Genetic mapping and functional analysis of a nodulation-defective mutant (sym19) of pea (Pisum sativum L.).
    Mol Gen Genet. 1999 Aug;262(1):1-11 PMID: 10503530
  24. MAX4 and RMS1 are orthologous dioxygenase-like genes that regulate shoot branching in Arabidopsis and pea.
    Genes Dev. 2003 Jun 15;17(12):1469-74 PMID: 12815068
  25. Alfalfa heat shock genes are differentially expressed during somatic embryogenesis.
    Plant Mol Biol. 1991 Jun;16(6):999-1007 PMID: 1863771
  26. A receptor kinase gene regulating symbiotic nodule development.
    Nature. 2002 Jun 27;417(6892):962-6 PMID: 12087406
  27. Genome mapping in capsicum and the evolution of genome structure in the solanaceae.
    Genetics. 1999 Jul;152(3):1183-202 PMID: 10388833
  28. Genome conservation among three legume genera detected with DNA markers.
    Genome. 1995 Oct;38(5):928-37 PMID: 18470218
  29. Genetic mapping of the non-nodulation phenotype of the mutant MN-1008 in tetraploid alfalfa (Medicago sativa).
    Mol Genet Genomics. 2002 Feb;266(6):1012-9 PMID: 11862496
  30. Comparative genome analysis of mungbean (Vigna radiata L. Wilczek) and cowpea (V. unguiculata L. Walpers) using RFLP mapping data.
    Theor Appl Genet. 1993 Aug;86(7):797-810 PMID: 24193874
  31. Comparison of a Brassica oleracea genetic map with the genome of Arabidopsis thaliana.
    Genetics. 2003 May;164(1):359-72 PMID: 12750346
  32. Karyotype analysis of four Vicia species using in situ hybridization with repetitive sequences.
    Ann Bot. 2003 Jun;91(7):921-6 PMID: 12770847
  33. Comparative linkage maps of the rice and maize genomes.
    Proc Natl Acad Sci U S A. 1993 Sep 1;90(17):7980-4 PMID: 8103599
  34. Genetic aspects of the organization of legumin genes in pea.
    Plant Mol Biol. 1993 Apr;22(1):101-12 PMID: 8499610
  35. T-protein of the glycine decarboxylase multienzyme complex: evidence for partial similarity to formyltetrahydrofolate synthetase.
    Plant Mol Biol. 1995 Mar;27(6):1215-20 PMID: 7766903
  36. PROLIFERATING INFLORESCENCE MERISTEM, a MADS-box gene that regulates floral meristem identity in pea.
    Plant Physiol. 2002 Jul;129(3):1150-9 PMID: 12114569
  37. RFLP Maps Based on a Common Set of Clones Reveal Modes of Chromosomal Evolution in Potato and Tomato.
    Genetics. 1988 Dec;120(4):1095-103 PMID: 17246486
  38. Gene and genome duplication.
    Curr Opin Genet Dev. 2001 Dec;11(6):681-4 PMID: 11682313
  39. Comparison of flowering time genes in Brassica rapa, B. napus and Arabidopsis thaliana.
    Genetics. 1997 Jul;146(3):1123-9 PMID: 9215913
  40. Nucleotide sequence of a pea (Pisum sativum L.) beta-1,3-glucanase gene.
    Plant Physiol. 1993 Mar;101(3):1121-2 PMID: 8310053
  41. Linkage mapping in diploid alfalfa (Medicago sativa).
    Genome. 1994 Feb;37(1):61-71 PMID: 7910147
  42. Transposable elements reveal the impact of introgression, rather than transposition, in Pisum diversity, evolution, and domestication.
    Mol Biol Evol. 2003 Dec;20(12):2067-75 PMID: 12949152
  43. Structure and expression of an alcohol dehydrogenase 1 gene from Pisum sativum (cv. "Greenfeast").
    J Mol Biol. 1987 May 5;195(1):115-23 PMID: 3309331
  44. Comparative genomics of plant chromosomes.
    Plant Cell. 2000 Sep;12(9):1523-40 PMID: 11006329
  45. RFLP maps of potato and their alignment with the homoeologous tomato genome.
    Theor Appl Genet. 1991 Nov;83(1):49-57 PMID: 24202256
  46. Comparative genome mapping in Brassica.
    Genetics. 1996 Dec;144(4):1903-10 PMID: 8978073
  47. Comparative mapping between Arabidopsis thaliana and Brassica nigra indicates that Brassica genomes have evolved through extensive genome replication accompanied by chromosome fusions and frequent rearrangements.
    Genetics. 1998 Nov;150(3):1217-28 PMID: 9799273
  48. Development of a mungbean ( Vigna radiata) RFLP linkage map and its comparison with lablab ( Lablab purpureus) reveals a high level of colinearity between the two genomes.
    Theor Appl Genet. 2002 Jul;105(1):160-166 PMID: 12582573
  49. A sequence-based genetic map of Medicago truncatula and comparison of marker colinearity with M. sativa.
    Genetics. 2004 Mar;166(3):1463-502 PMID: 15082563
  50. Cloning and characterization of the P subunit of glycine decarboxylase from pea (Pisum sativum).
    J Biol Chem. 1992 Mar 15;267(8):5355-60 PMID: 1347530
  51. RFLP variation in diploid and tetraploid alfalfa.
    Theor Appl Genet. 1991 Nov;83(1):89-96 PMID: 24202261
Article Info
Journal
Molecular genetics and genomics : MGG
Abbr.
Mol Genet Genomics
ISSN
1617-4615
DOI
10.1007/s00438-004-1055-z
Published
2004-10-00
Epub
2004-00-01
Pages
235-46
Language
English
Region
Germany
NLM ID
101093320
Subset
IM
External Links
PubMed source DOI: 10.1007/s00438-004-1055-z View journal details
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com

Copyright © 2026.Genelibs Jinan Honghui Biotechnology Co., Ltd. 鲁ICP备20007159号-2