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PMID: 15252203 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, Non-P.H.S. Research Support, U.S. Gov't, P.H.S.

From the Cover: The dynamics of genomic-length DNA molecules in 100-nm channels.

Tegenfeldt JO, Prinz C, Cao H, Chou S, Reisner WW, Riehn R, Wang YM, Cox EC, Sturm JC, Silberzan P, Austin RH

Abstract

We show that genomic-length DNA molecules imaged in nanochannels have an extension along the channel that scales linearly with the contour length of the polymer, in agreement with the scaling arguments developed by de Gennes for self-avoiding confined polymers. This fundamental relationship allows us to measure directly the contour length of single DNA molecules confined in the channels, and the statistical analysis of the dynamics of the polymer in the nanochannel allows us to compute the SD of the mean of the extension. This statistical analysis allows us to measure the extension of lambda DNA multimers with a 130-nm SD in 1 min.

MeSH Terms
DNA/chemistry,genetics Genome Kinetics Models, Molecular Nucleic Acid Conformation Sensitivity and Specificity
Chemicals
DNA
Authors & Affiliations
11 authors, click to expand affiliations / ORCID
Tegenfeldt Jonas O
Department of Physics, Lund University, SE-221 00 Lund, Sweden.
Prinz Christelle
Cao Han
Chou Steven
Reisner Walter W
Riehn Robert
Wang Yan Mei
Cox Edward C
Sturm James C
Silberzan Pascal
Austin Robert H
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10 references, click to expand
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Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
2004-07-27
Epub
2004-00-13
Pages
10979-83
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC503729
Subset
IM
Grants
NHGRI NIH HHS · R01 HG001506 · United States
NHGRI NIH HHS · HG01506 · United States
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