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PMID: 15247099 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

SARGE: a tool for creation of putative genetic networks.

Bioinformatics (Oxford, England) ·Vol. 20 ·No. 18 ·2004-12-12 ·Pages 3638-40

Shaw OJ, Harwood C, Steggles LJ, Wipat A

Abstract

SARGE is a tool for creating, visualizing and manipulating a putative genetic network from time series microarray data. The tool assigns potential edges through time-lagged correlation, incorporates a clustering mechanism, an interactive visual graph representation and employs simulated annealing for network optimization. The application is available as a .jar file from http://www.bioinformatics.cs.ncl.ac.uk/sarge/index.html.

MeSH Terms
Algorithms Gene Expression Profiling/methods Gene Expression Regulation/physiology Models, Genetic Oligonucleotide Array Sequence Analysis/methods Pattern Recognition, Automated/methods Signal Transduction/physiology Software User-Computer Interface
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Shaw O J
School of Computing Science, University of Newcastle upon Tyne, Newcastle upon Tyne NE1 7RU, UK.
Harwood C
Steggles L J
Wipat A
Article Info
Journal
Bioinformatics (Oxford, England)
Abbr.
Bioinformatics
ISSN
1367-4803
Published
2004-12-12
Epub
2004-00-09
Pages
3638-40
Language
English
Region
England
NLM ID
9808944
Subset
IM
Analysis Services
Analysis Services

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