Home LiteratureArticle Details
PMID: 15240499 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Placing single-molecule T4 lysozyme enzymes on a bacterial cell surface: toward probing single-molecule enzymatic reaction in living cells.

Biophysical journal ·Vol. 87 ·No. 1 ·2004-07-00 ·Pages 656-61

Hu D, Lu HP

Abstract

The T4 lysozyme enzymatic hydrolyzation reaction of bacterial cell walls is an important biological process, and single-molecule enzymatic reaction dynamics have been studied under physiological condition using purified Escherichia coli cell walls as substrates. Here, we report progress toward characterizing the T4 lysozyme enzymatic reaction on a living bacterial cell wall using a combined single-molecule placement and spectroscopy. Placing a dye-labeled single T4 lysozyme molecule on a targeted bacterial cell wall by using a hydrodynamic microinjection approach, we monitored single-molecule rotational motions during binding, attachment to, and dissociation from the cell wall by tracing single-molecule fluorescence intensity time trajectories and polarization. The single-molecule attachment duration of the T4 lysozyme to the cell wall during enzymatic reactions was typically shorter than the photobleaching time under physiological conditions. Applying single-molecule fluorescence polarization measurements to characterize the binding and motions of the T4 lysozyme molecules, we observed that the motions of wild-type and mutant T4 lysozyme proteins are essentially the same whether under an enzymatic reaction or not. The changing of the fluorescence polarization suggests that the motions of the T4 lysozyme are associated with orientational rotations. This observation also suggests that the T4 lysozyme binding-unbinding motions on cell walls involve a complex mechanism beyond a single-step first-order rate process.

MeSH Terms
Bacteriophage T4/enzymology Cell Wall/enzymology Escherichia coli/enzymology Fluorescence Polarization/methods Fluorescent Dyes/chemistry Muramidase/metabolism Photobleaching Spectrometry, Fluorescence
Chemicals
Fluorescent Dyes Muramidase
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Hu Dehong
Pacific Northwest National Laboratory, Fundamental Science Division, Richland, Washington 99352, USA.
Lu H Peter
References (14)
14 references, click to expand
  1. Imaging single-molecule dichroism.
    Opt Lett. 1997 May 1;22(9):651-3 PMID: 18185620
  2. Resolution of distinct rotational substeps by submillisecond kinetic analysis of F1-ATPase.
    Nature. 2001 Apr 19;410(6831):898-904 PMID: 11309608
  3. Single-molecule enzymatic dynamics.
    Science. 1998 Dec 4;282(5395):1877-82 PMID: 9836635
  4. Single-molecule anisotropy imaging.
    Biophys J. 1999 Nov;77(5):2864-70 PMID: 10545384
  5. A lysoplate assay for Escherichia coli cell wall-active enzymes.
    Anal Biochem. 1985 Nov 1;150(2):258-63 PMID: 3911821
  6. Relation between hen egg white lysozyme and bacteriophage T4 lysozyme: evolutionary implications.
    J Mol Biol. 1981 Apr 25;147(4):545-58 PMID: 7277500
  7. Single-molecule conformational dynamics of fluctuating noncovalent DNA-protein interactions in DNA damage recognition.
    J Am Chem Soc. 2001 Sep 19;123(37):9184-5 PMID: 11552836
  8. Purification of bacteriophage T4 lysozyme.
    J Biol Chem. 1968 Jan 25;243(2):391-7 PMID: 4865643
  9. Programmable delivery of DNA through a nanopipet.
    Anal Chem. 2002 Mar 15;74(6):1380-5 PMID: 11922307
  10. Three-dimensional imaging of single molecules solvated in pores of poly(acrylamide) gels.
    Science. 1996 Nov 8;274(5289):966-9 PMID: 8875935
  11. Direct measurement of single-molecule diffusion and photodecomposition in free solution.
    Science. 1997 Feb 21;275(5303):1106-9 PMID: 9027307
  12. Fluorescence correlation spectroscopy of enzymatic DNA polymerization.
    Biochemistry. 1998 Sep 15;37(37):12971-8 PMID: 9737877
  13. A single-molecule study of RNA catalysis and folding.
    Science. 2000 Jun 16;288(5473):2048-51 PMID: 10856219
  14. A relationship between protein stability and protein function.
    Proc Natl Acad Sci U S A. 1995 Jan 17;92(2):452-6 PMID: 7831309
Article Info
Journal
Biophysical journal
Abbr.
Biophys J
ISSN
0006-3495
Published
2004-07-00
Pages
656-61
Language
English
Region
United States
NLM ID
0370626
PMCID
PMC1304389
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com