Home LiteratureArticle Details
PMID: 15207071 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Predominant tuberculosis spoligotypes, Delhi, India.

Emerging infectious diseases ·Vol. 10 ·No. 6 ·2004-06-00 ·Pages 1138-42

Singh UB, Suresh N, Bhanu NV, Arora J, Pant H, Sinha S, Aggarwal RC, Singh S, Pande JN, Sola C, Rastogi N, Seth P

Abstract

One hundred five Mycobacterium tuberculosis clinical isolates from the Delhi area were typed by spoligotyping; 45 patterns were identified. Comparison with an international spoligotype database showed type 26, Delhi type (22%), type 54 (12%), and type 1, Beijing type (8%), as the most common. Eighteen spoligotypes did not match any existing database pattern.

MeSH Terms
Adolescent Adult Bacterial Typing Techniques Cluster Analysis DNA, Bacterial/chemistry,genetics Female Genotype Humans India Male Middle Aged Mycobacterium tuberculosis/classification,genetics Phylogeny Repetitive Sequences, Nucleic Acid/genetics Tuberculosis/microbiology
Chemicals
DNA, Bacterial
Authors & Affiliations
12 authors, click to expand affiliations / ORCID
Singh Urvashi Balbir
Department of Microbiology, All India Institute of Medical Sciences, New Delhi, India. urvashi00@hotmaiol.com
Suresh Naga
Bhanu N Vijaya
Arora Jyoti
Pant Hema
Sinha Sanjeev
Aggarwal Ram Charan
Singh Sushma
Pande Jitendra Nath
Sola Christophe
Rastogi Nalin
Seth Pradeep
References (16)
16 references, click to expand
  1. Characterization of Mycobacterium tuberculosis isolates from patients in Houston, Texas, by spoligotyping.
    J Clin Microbiol. 2000 Feb;38(2):669-76 PMID: 10655365
  2. Comparison of methods based on different molecular epidemiological markers for typing of Mycobacterium tuberculosis complex strains: interlaboratory study of discriminatory power and reproducibility.
    J Clin Microbiol. 1999 Aug;37(8):2607-18 PMID: 10405410
  3. Spoligotype database of Mycobacterium tuberculosis: biogeographic distribution of shared types and epidemiologic and phylogenetic perspectives.
    Emerg Infect Dis. 2001 May-Jun;7(3):390-6 PMID: 11384514
  4. A data-mining approach to spacer oligonucleotide typing of Mycobacterium tuberculosis.
    Bioinformatics. 2002 Feb;18(2):235-43 PMID: 11847071
  5. A new evolutionary scenario for the Mycobacterium tuberculosis complex.
    Proc Natl Acad Sci U S A. 2002 Mar 19;99(6):3684-9 PMID: 11891304
  6. Progress toward tuberculosis control--India, 2001.
    MMWR Morb Mortal Wkly Rep. 2002 Mar 22;51(11):229-32 PMID: 11925019
  7. Transmission of drug-resistant tuberculosis in Texas and Mexico.
    J Clin Microbiol. 2002 Aug;40(8):2716-24 PMID: 12149319
  8. Predominace of a novel Mycobacterium tuberculosis genotype in the Delhi region of India.
    Tuberculosis (Edinb). 2002;82(2-3):105-12 PMID: 12356462
  9. Microevolution of the direct repeat region of Mycobacterium tuberculosis: implications for interpretation of spoligotyping data.
    J Clin Microbiol. 2002 Dec;40(12):4457-65 PMID: 12454136
  10. Snapshot of moving and expanding clones of Mycobacterium tuberculosis and their global distribution assessed by spoligotyping in an international study.
    J Clin Microbiol. 2003 May;41(5):1963-70 PMID: 12734235
  11. Predominance of a single genotype of Mycobacterium tuberculosis in countries of east Asia.
    J Clin Microbiol. 1995 Dec;33(12):3234-8 PMID: 8586708
  12. Differentiation of Mycobacterium tuberculosis isolates by spoligotyping and IS6110 restriction fragment length polymorphism.
    J Clin Microbiol. 1997 Mar;35(3):647-51 PMID: 9041405
  13. Simultaneous detection and strain differentiation of Mycobacterium tuberculosis for diagnosis and epidemiology.
    J Clin Microbiol. 1997 Apr;35(4):907-14 PMID: 9157152
  14. Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination.
    Proc Natl Acad Sci U S A. 1997 Sep 2;94(18):9869-74 PMID: 9275218
  15. Quality assurance programme for drug susceptibility testing of Mycobacterium tuberculosis in the WHO/IUATLD Supranational Laboratory Network: first round of proficiency testing.
    Int J Tuberc Lung Dis. 1997 Jun;1(3):231-8 PMID: 9432369
  16. Genetic variation and evolutionary origin of the direct repeat locus of Mycobacterium tuberculosis complex bacteria.
    J Bacteriol. 2000 May;182(9):2393-401 PMID: 10762237
Article Info
Journal
Emerging infectious diseases
Abbr.
Emerg Infect Dis
ISSN
1080-6040
DOI
10.3201/eid1006.030575
Email
urvashi00@hotmaiol.com
Published
2004-06-00
Pages
1138-42
Language
English
Region
United States
NLM ID
9508155
PMCID
PMC3323169
Subset
IM
External Links
PubMed source DOI: 10.3201/eid1006.030575 PMC Full Text View journal details
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com

Copyright © 2026.Genelibs Jinan Honghui Biotechnology Co., Ltd. 鲁ICP备20007159号-2