Home LiteratureArticle Details
PMID: 15100410 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Erralpha and Gabpa/b specify PGC-1alpha-dependent oxidative phosphorylation gene expression that is altered in diabetic muscle.

Mootha VK, Handschin C, Arlow D, Xie X, St Pierre J, Sihag S, Yang W, Altshuler D, Puigserver P, Patterson N, Willy PJ, Schulman IG, Heyman RA, Lander ES, Spiegelman BM

Abstract

Recent studies have shown that genes involved in oxidative phosphorylation (OXPHOS) exhibit reduced expression in skeletal muscle of diabetic and prediabetic humans. Moreover, these changes may be mediated by the transcriptional coactivator peroxisome proliferator-activated receptor gamma coactivator-1alpha (PGC-1alpha). By combining PGC-1alpha-induced genome-wide transcriptional profiles with a computational strategy to detect cis-regulatory motifs, we identified estrogen-related receptor alpha (Erralpha) and GA repeat-binding protein alpha as key transcription factors regulating the OXPHOS pathway. Interestingly, the genes encoding these two transcription factors are themselves PGC-1alpha-inducible and contain variants of both motifs near their promoters. Cellular assays confirmed that Erralpha and GA-binding protein a partner with PGC-1alpha in muscle to form a double-positive-feedback loop that drives the expression of many OXPHOS genes. By using a synthetic inhibitor of Erralpha, we demonstrated its key role in PGC-1alpha-mediated effects on gene regulation and cellular respiration. These results illustrate the dissection of gene regulatory networks in a complex mammalian system, elucidate the mechanism of PGC-1alpha action in the OXPHOS pathway, and suggest that Erralpha agonists may ameliorate insulin-resistance in individuals with type 2 diabetes mellitus.

MeSH Terms
Animals Base Sequence DNA Primers DNA-Binding Proteins/genetics,physiology Diabetes Mellitus, Experimental/genetics,metabolism Evolution, Molecular GA-Binding Protein Transcription Factor Gene Expression Regulation Mice Oxidative Phosphorylation Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha Polymerase Chain Reaction Receptors, Cytoplasmic and Nuclear/genetics,physiology Receptors, Estrogen/genetics,physiology Trans-Activators/physiology Transcription Factors/genetics,physiology Transcription, Genetic Transfection
Chemicals
DNA Primers DNA-Binding Proteins ERRalpha estrogen-related receptor GA-Binding Protein Transcription Factor Gabpa protein, mouse Peroxisome Proliferator-Activated Receptor Gamma Coactivator 1-alpha Ppargc1a protein, mouse Receptors, Cytoplasmic and Nuclear Receptors, Estrogen Trans-Activators Transcription Factors
Authors & Affiliations
15 authors, click to expand affiliations / ORCID
Mootha Vamsi K
The Eli and Edythe L. Broad Institute, Massachusetts Institute of Technology and Harvard University, Cambridge, MA 02139-1561, USA. vmootha@broad.mit.edu
Handschin Christoph
Arlow Dan
Xie Xiaohui
St Pierre Julie
Sihag Smita
Yang Wenli
Altshuler David
Puigserver Pere
Patterson Nick
Willy Patricia J
Schulman Ira G
Heyman Richard A
Lander Eric S
Spiegelman Bruce M
References (35)
35 references, click to expand
  1. The alpha and beta subunits of the GA-binding protein form a stable heterodimer in solution. Revised model of heterotetrameric complex assembly.
    J Biol Chem. 2000 Mar 17;275(11):7749-56 PMID: 10713087
  2. Mechanisms controlling mitochondrial biogenesis and respiration through the thermogenic coactivator PGC-1.
    Cell. 1999 Jul 9;98(1):115-24 PMID: 10412986
  3. Regulatory element detection using correlation with expression.
    Nat Genet. 2001 Feb;27(2):167-71 PMID: 11175784
  4. Isolation of a bi-directional promoter directing expression of the mouse GABPalpha and ATP synthase coupling factor 6 genes.
    Gene. 2000 Dec 31;261(2):311-20 PMID: 11167019
  5. Restoration of insulin-sensitive glucose transporter (GLUT4) gene expression in muscle cells by the transcriptional coactivator PGC-1.
    Proc Natl Acad Sci U S A. 2001 Mar 27;98(7):3820-5 PMID: 11274399
  6. Feature extraction and normalization algorithms for high-density oligonucleotide gene expression array data.
    J Cell Biochem Suppl. 2001;Suppl 37:120-5 PMID: 11842437
  7. A genomic regulatory network for development.
    Science. 2002 Mar 1;295(5560):1669-78 PMID: 11872831
  8. Transcriptional activators and coactivators in the nuclear control of mitochondrial function in mammalian cells.
    Gene. 2002 Mar 6;286(1):81-9 PMID: 11943463
  9. Gene expression profile in skeletal muscle of type 2 diabetes and the effect of insulin treatment.
    Diabetes. 2002 Jun;51(6):1913-20 PMID: 12031981
  10. An algorithm for finding protein-DNA binding sites with applications to chromatin-immunoprecipitation microarray experiments.
    Nat Biotechnol. 2002 Aug;20(8):835-9 PMID: 12101404
  11. Transcriptional co-activator PGC-1 alpha drives the formation of slow-twitch muscle fibres.
    Nature. 2002 Aug 15;418(6899):797-801 PMID: 12181572
  12. Dysfunction of mitochondria in human skeletal muscle in type 2 diabetes.
    Diabetes. 2002 Oct;51(10):2944-50 PMID: 12351431
  13. Peroxisome proliferator-activated receptor coactivator-1alpha (PGC-1alpha) coactivates the cardiac-enriched nuclear receptors estrogen-related receptor-alpha and -gamma. Identification of novel leucine-rich interaction motif within PGC-1alpha.
    J Biol Chem. 2002 Oct 25;277(43):40265-74 PMID: 12181319
  14. Human-mouse alignments with BLASTZ.
    Genome Res. 2003 Jan;13(1):103-7 PMID: 12529312
  15. Peroxisome proliferator-activated receptor-gamma coactivator 1 alpha (PGC-1 alpha): transcriptional coactivator and metabolic regulator.
    Endocr Rev. 2003 Feb;24(1):78-90 PMID: 12588810
  16. The transcriptional coactivator PGC-1 regulates the expression and activity of the orphan nuclear receptor estrogen-related receptor alpha (ERRalpha).
    J Biol Chem. 2003 Mar 14;278(11):9013-8 PMID: 12522104
  17. Integrating regulatory motif discovery and genome-wide expression analysis.
    Proc Natl Acad Sci U S A. 2003 Mar 18;100(6):3339-44 PMID: 12626739
  18. Sequencing and comparison of yeast species to identify genes and regulatory elements.
    Nature. 2003 May 15;423(6937):241-54 PMID: 12748633
  19. Mitochondrial dysfunction in the elderly: possible role in insulin resistance.
    Science. 2003 May 16;300(5622):1140-2 PMID: 12750520
  20. An autoregulatory loop controls peroxisome proliferator-activated receptor gamma coactivator 1alpha expression in muscle.
    Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):7111-6 PMID: 12764228
  21. ChipInfo: Software for extracting gene annotation and gene ontology information for microarray analysis.
    Nucleic Acids Res. 2003 Jul 1;31(13):3483-6 PMID: 12824349
  22. PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes.
    Nat Genet. 2003 Jul;34(3):267-73 PMID: 12808457
  23. Coordinated reduction of genes of oxidative metabolism in humans with insulin resistance and diabetes: Potential role of PGC1 and NRF1.
    Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8466-71 PMID: 12832613
  24. Bioenergetic analysis of peroxisome proliferator-activated receptor gamma coactivators 1alpha and 1beta (PGC-1alpha and PGC-1beta) in muscle cells.
    J Biol Chem. 2003 Jul 18;278(29):26597-603 PMID: 12734177
  25. Skeletal muscle overexpression of nuclear respiratory factor 1 increases glucose transport capacity.
    FASEB J. 2003 Sep;17(12):1666-73 PMID: 12958173
  26. Recent advances in computational promoter analysis in understanding the transcriptional regulatory network.
    Biochem Biophys Res Commun. 2003 Sep 26;309(3):495-501 PMID: 12963016
  27. PPARgamma coactivator 1beta/ERR ligand 1 is an ERR protein ligand, whose expression induces a high-energy expenditure and antagonizes obesity.
    Proc Natl Acad Sci U S A. 2003 Oct 14;100(21):12378-83 PMID: 14530391
  28. Reduced fat mass in mice lacking orphan nuclear receptor estrogen-related receptor alpha.
    Mol Cell Biol. 2003 Nov;23(22):7947-56 PMID: 14585956
  29. Integrated analysis of protein composition, tissue diversity, and gene regulation in mouse mitochondria.
    Cell. 2003 Nov 26;115(5):629-40 PMID: 14651853
  30. Mechanisms of transactivation by retinoic acid receptors.
    Bioessays. 1993 May;15(5):309-15 PMID: 8393666
  31. Activation of the human mitochondrial transcription factor A gene by nuclear respiratory factors: a potential regulatory link between nuclear and mitochondrial gene expression in organelle biogenesis.
    Proc Natl Acad Sci U S A. 1994 Feb 15;91(4):1309-13 PMID: 8108407
  32. Estrogen-related receptor alpha 1 functionally binds as a monomer to extended half-site sequences including ones contained within estrogen-response elements.
    Mol Endocrinol. 1997 Mar;11(3):342-52 PMID: 9058380
  33. The orphan nuclear receptor estrogen-related receptor alpha is a transcriptional regulator of the human medium-chain acyl coenzyme A dehydrogenase gene.
    Mol Cell Biol. 1997 Sep;17(9):5400-9 PMID: 9271417
  34. The structure of GABPalpha/beta: an ETS domain- ankyrin repeat heterodimer bound to DNA.
    Science. 1998 Feb 13;279(5353):1037-41 PMID: 9461436
  35. Systematic determination of genetic network architecture.
    Nat Genet. 1999 Jul;22(3):281-5 PMID: 10391217
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
2004-04-27
Epub
2004-00-20
Pages
6570-5
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC404086
Subset
IM
Corrections
ErratumIn
-
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com