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PMID: 14657116 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Idiomarina loihiensis sp. nov., a halophilic gamma-Proteobacterium from the Lō'ihi submarine volcano, Hawai'i.

International journal of systematic and evolutionary microbiology ·Vol. 53 ·No. Pt 6 ·2003-11-00 ·Pages 1873-9

Donachie SP, Hou S, Gregory TS, Malahoff A, Alam M

Abstract

During an investigation of bacterial diversity at hydrothermal vents on the Lō'ihi Seamount, Hawai'i, a novel bacterium (designated L2-TR(T)) was cultivated, which shares 99.9 % 16S rRNA gene sequence similarity over 1415 nt with an uncultured eubacterium from sediment at a depth of 11 000 m in the Mariana Trench. The nearest cultivated neighbour of L2-TR(T), however, is Idiomarina abyssalis KMM 227(T), with which it shares 98.9 % 16S rRNA sequence similarity. L2-TR(T) differed from I. abyssalis KMM 227(T) in several phenotypic respects, including growth at 46 degrees C and in medium that contained 20 % (w/v) NaCl. DNA-DNA hybridization data showed that L2-TR(T) did not belong to the species I. abyssalis (43.4 % DNA-DNA reassociation). Cells of L2-TR(T) were Gram-negative rods, 0.35 microm wide and 0.7-1.0 microm long, which were occasionally up to 1.8 microm in length. Cells were motile by a single polar or subpolar flagellum. The major fatty acid in L2-TR(T) was iso-C(15 : 0) (32.6 %). The DNA G+C content was 47.4 mol%. Phenotypic and genotypic analyses indicated that L2-TR(T) could be assigned to the genus Idiomarina but, based on significant phenotypic and genotypic differences, constituted a novel species within this genus, Idiomarina loihiensis sp. nov., of which L2-TR(T) (=ATCC BAA-735(T)=DSM 15497(T)) is the type strain.

MeSH Terms
Alteromonadaceae/classification,isolation & purification,physiology,ultrastructure DNA, Bacterial/genetics,isolation & purification DNA, Ribosomal/genetics,isolation & purification Hawaii Microscopy, Electron, Scanning Molecular Sequence Data Phylogeny RNA, Bacterial/genetics,isolation & purification RNA, Ribosomal, 16S/genetics,isolation & purification Seawater/microbiology Volcanic Eruptions
Chemicals
DNA, Bacterial DNA, Ribosomal RNA, Bacterial RNA, Ribosomal, 16S
Authors & Affiliations
5 authors, click to expand affiliations / ORCID
Donachie Stuart P
Department of Microbiology, University of Hawai'i, Snyder Hall III, 2538 The Mall, Honolulu, HI 96822, USA.
Hou Shaobin
Gregory Todd S
Malahoff Alexander
Alam Maqsudul
Article Info
Journal
International journal of systematic and evolutionary microbiology
Abbr.
Int J Syst Evol Microbiol
ISSN
1466-5026
Published
2003-11-00
Pages
1873-9
Language
English
Region
England
NLM ID
100899600
Subset
IM
Databases
GENBANK
AF288370
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