Home LiteratureArticle Details
PMID: 14624612 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't Research Support, U.S. Gov't, P.H.S.

Millisecond kinetics on a microfluidic chip using nanoliters of reagents.

Journal of the American Chemical Society ·Vol. 125 ·No. 47 ·2003-11-26 ·Pages 14613-9

Song H, Ismagilov RF

Abstract

This paper describes a microfluidic chip for performing kinetic measurements with better than millisecond resolution. Rapid kinetic measurements in microfluidic systems are complicated by two problems: mixing is slow and dispersion is large. These problems also complicate biochemical assays performed in microfluidic chips. We have recently shown (Song, H.; Tice, J. D.; Ismagilov, R. F. Angew. Chem., Int. Ed. 2003, 42, 768-772) how multiphase fluid flow in microchannels can be used to address both problems by transporting the reagents inside aqueous droplets (plugs) surrounded by an immiscible fluid. Here, this droplet-based microfluidic system was used to extract kinetic parameters of an enzymatic reaction. Rapid single-turnover kinetics of ribonuclease A (RNase A) was measured with better than millisecond resolution using sub-microliter volumes of solutions. To obtain the single-turnover rate constant (k = 1100 +/- 250 s(-1)), four new features for this microfluidics platform were demonstrated: (i) rapid on-chip dilution, (ii) multiple time range access, (iii) biocompatibility with RNase A, and (iv) explicit treatment of mixing for improving time resolution of the system. These features are discussed using kinetics of RNase A. From fluorescent images integrated for 2-4 s, each kinetic profile can be obtained using less than 150 nL of solutions of reagents because this system relies on chaotic advection inside moving droplets rather than on turbulence to achieve rapid mixing. Fabrication of these devices in PDMS is straightforward and no specialized equipment, except for a standard microscope with a CCD camera, is needed to run the experiments. This microfluidic platform could serve as an inexpensive and economical complement to stopped-flow methods for a broad range of time-resolved experiments and assays in chemistry and biochemistry.

MeSH Terms
Biocompatible Materials/chemistry Kinetics Microchemistry Microfluidics/instrumentation,methods Ribonuclease, Pancreatic/chemistry,metabolism
Chemicals
Biocompatible Materials Ribonuclease, Pancreatic
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Song Helen
Department of Chemistry, The University of Chicago, 5735 South Ellis Avenue, Chicago, IL 60637, USA.
Ismagilov Rustem F
References (32)
32 references, click to expand
  1. Autocatalytic processes in mixing flows.
    Phys Rev Lett. 1994 May 2;72(18):2875-2878 PMID: 10056007
  2. Breakdown of Ovchinnikov-Zeldovich Segregation in the A+B-->0 Reaction under Lévy Mixing.
    Phys Rev Lett. 1996 Sep 23;77(13):2830-2833 PMID: 10062056
  3. Chemical transformations in individual ultrasmall biomimetic containers.
    Science. 1999 Mar 19;283(5409):1892-5 PMID: 10082457
  4. Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle x-ray scattering.
    Proc Natl Acad Sci U S A. 1999 Aug 31;96(18):10115-7 PMID: 10468571
  5. Hypersensitive substrate for ribonucleases.
    Nucleic Acids Res. 1999 Sep 15;27(18):3696-701 PMID: 10471739
  6. Proteomics to study genes and genomes.
    Nature. 2000 Jun 15;405(6788):837-46 PMID: 10866210
  7. Distinguishing between two-state and three-state models for ubiquitin folding.
    Biochemistry. 2000 Sep 26;39(38):11696-701 PMID: 10995237
  8. Time resolved collapse of a folding protein observed with small angle x-ray scattering.
    Phys Rev Lett. 2001 May 21;86(21):4962-5 PMID: 11384392
  9. On the origin of selective nitrous oxide N-N bond cleavage by three-coordinate molybdenum(III) complexes.
    J Am Chem Soc. 2001 Aug 1;123(30):7271-86 PMID: 11472154
  10. Substrate recognition and selection by the initiation module PheATE of gramicidin S synthetase.
    J Am Chem Soc. 2001 Nov 14;123(45):11208-18 PMID: 11697963
  11. A fluorogenic assay using pressure-driven flow on a microchip.
    Electrophoresis. 2001 Oct;22(18):3916-23 PMID: 11700721
  12. Intermediate Q from soluble methane monooxygenase hydroxylates the mechanistic substrate probe norcarane: evidence for a stepwise reaction.
    J Am Chem Soc. 2001 Dec 5;123(48):11831-7 PMID: 11724588
  13. Chaotic mixer for microchannels.
    Science. 2002 Jan 25;295(5555):647-51 PMID: 11809963
  14. Design and characterization of immobilized enzymes in microfluidic systems.
    Anal Chem. 2002 Jan 15;74(2):379-85 PMID: 11811412
  15. Artificial blood.
    Science. 2002 Feb 8;295(5557):1002-5 PMID: 11834811
  16. Ribonuclease A.
    Chem Rev. 1998 May 7;98(3):1045-1066 PMID: 11848924
  17. Rapid compaction during RNA folding.
    Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4266-71 PMID: 11929997
  18. The rate-limiting step in the folding of a large ribozyme without kinetic traps.
    Proc Natl Acad Sci U S A. 2002 Jun 25;99(13):8518-23 PMID: 12084911
  19. Advances in proteomic technologies.
    Annu Rev Biomed Eng. 2002;4:349-73 PMID: 12117762
  20. Poly(dimethylsiloxane) as a material for fabricating microfluidic devices.
    Acc Chem Res. 2002 Jul;35(7):491-9 PMID: 12118988
  21. Single-turnover kinetics of Saccharomyces cerevisiae inorganic pyrophosphatase.
    Biochemistry. 2002 Oct 8;41(40):12025-31 PMID: 12356302
  22. A microfluidic system for controlling reaction networks in time.
    Angew Chem Int Ed Engl. 2003 Feb 17;42(7):768-72 PMID: 12596195
  23. Micromixer-based time-resolved NMR: applications to ubiquitin protein conformation.
    Anal Chem. 2003 Feb 15;75(4):956-60 PMID: 12622391
  24. A miniaturized, parallel, serially diluted immunoassay for analyzing multiple antigens.
    J Am Chem Soc. 2003 May 7;125(18):5294-5 PMID: 12720439
  25. Experimental test of scaling of mixing by chaotic advection in droplets moving through microfluidic channels.
    Appl Phys Lett. 2003 Dec 1;83(12):4664-4666 PMID: 17940580
  26. Value of general Acid-base catalysis to ribonuclease a.
    J Am Chem Soc. 1994 Jun;116(12):5467-8 PMID: 21391696
  27. A simple test for inactivation of an enzyme during assay.
    Biochim Biophys Acta. 1965 Jul 29;105(1):193-5 PMID: 4221326
  28. Partial liquid ventilation with perflubron in premature infants with severe respiratory distress syndrome. The LiquiVent Study Group.
    N Engl J Med. 1996 Sep 12;335(11):761-7 PMID: 8778584
  29. Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase.
    Science. 1997 Jan 17;275(5298):377-80 PMID: 8994032
  30. Submillisecond protein folding kinetics studied by ultrarapid mixing.
    Proc Natl Acad Sci U S A. 1997 Mar 4;94(5):1779-84 PMID: 9050855
  31. A continuous-flow capillary mixing method to monitor reactions on the microsecond time scale.
    Biophys J. 1998 May;74(5):2714-21 PMID: 9591695
  32. An integrated nanoliter DNA analysis device.
    Science. 1998 Oct 16;282(5388):484-7 PMID: 9774277
Article Info
Journal
Journal of the American Chemical Society
Abbr.
J Am Chem Soc
ISSN
0002-7863
Published
2003-11-26
Pages
14613-9
Language
English
Region
United States
NLM ID
7503056
PMCID
PMC1769313
Subset
IM
Grants
NIBIB NIH HHS · R01 EB001903 · United States
NIGMS NIH HHS · T32 GM008720 · United States
NIGMS NIH HHS · GM 08720 · United States
NIBIB NIH HHS · R01 EB 001903 · United States
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com