Abstract
This paper describes a microfluidic chip for performing kinetic measurements with better than millisecond resolution. Rapid kinetic measurements in microfluidic systems are complicated by two problems: mixing is slow and dispersion is large. These problems also complicate biochemical assays performed in microfluidic chips. We have recently shown (Song, H.; Tice, J. D.; Ismagilov, R. F. Angew. Chem., Int. Ed. 2003, 42, 768-772) how multiphase fluid flow in microchannels can be used to address both problems by transporting the reagents inside aqueous droplets (plugs) surrounded by an immiscible fluid. Here, this droplet-based microfluidic system was used to extract kinetic parameters of an enzymatic reaction. Rapid single-turnover kinetics of ribonuclease A (RNase A) was measured with better than millisecond resolution using sub-microliter volumes of solutions. To obtain the single-turnover rate constant (k = 1100 +/- 250 s(-1)), four new features for this microfluidics platform were demonstrated: (i) rapid on-chip dilution, (ii) multiple time range access, (iii) biocompatibility with RNase A, and (iv) explicit treatment of mixing for improving time resolution of the system. These features are discussed using kinetics of RNase A. From fluorescent images integrated for 2-4 s, each kinetic profile can be obtained using less than 150 nL of solutions of reagents because this system relies on chaotic advection inside moving droplets rather than on turbulence to achieve rapid mixing. Fabrication of these devices in PDMS is straightforward and no specialized equipment, except for a standard microscope with a CCD camera, is needed to run the experiments. This microfluidic platform could serve as an inexpensive and economical complement to stopped-flow methods for a broad range of time-resolved experiments and assays in chemistry and biochemistry.
MeSH Terms
Biocompatible Materials/chemistry
Kinetics
Microchemistry
Microfluidics/instrumentation,methods
Ribonuclease, Pancreatic/chemistry,metabolism
Chemicals
Biocompatible Materials
Ribonuclease, Pancreatic
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Song Helen
Department of Chemistry, The University of Chicago, 5735 South Ellis Avenue, Chicago, IL 60637, USA.
Ismagilov Rustem F
References (32)
32 references, click to expand
-
Autocatalytic processes in mixing flows.
Phys Rev Lett. 1994 May 2;72(18):2875-2878
PMID: 10056007
-
Breakdown of Ovchinnikov-Zeldovich Segregation in the A+B-->0 Reaction under Lévy Mixing.
Phys Rev Lett. 1996 Sep 23;77(13):2830-2833
PMID: 10062056
-
Chemical transformations in individual ultrasmall biomimetic containers.
Science. 1999 Mar 19;283(5409):1892-5
PMID: 10082457
-
Compactness of the denatured state of a fast-folding protein measured by submillisecond small-angle x-ray scattering.
Proc Natl Acad Sci U S A. 1999 Aug 31;96(18):10115-7
PMID: 10468571
-
Hypersensitive substrate for ribonucleases.
Nucleic Acids Res. 1999 Sep 15;27(18):3696-701
PMID: 10471739
-
Proteomics to study genes and genomes.
Nature. 2000 Jun 15;405(6788):837-46
PMID: 10866210
-
Distinguishing between two-state and three-state models for ubiquitin folding.
Biochemistry. 2000 Sep 26;39(38):11696-701
PMID: 10995237
-
Time resolved collapse of a folding protein observed with small angle x-ray scattering.
Phys Rev Lett. 2001 May 21;86(21):4962-5
PMID: 11384392
-
On the origin of selective nitrous oxide N-N bond cleavage by three-coordinate molybdenum(III) complexes.
J Am Chem Soc. 2001 Aug 1;123(30):7271-86
PMID: 11472154
-
Substrate recognition and selection by the initiation module PheATE of gramicidin S synthetase.
J Am Chem Soc. 2001 Nov 14;123(45):11208-18
PMID: 11697963
-
A fluorogenic assay using pressure-driven flow on a microchip.
Electrophoresis. 2001 Oct;22(18):3916-23
PMID: 11700721
-
Intermediate Q from soluble methane monooxygenase hydroxylates the mechanistic substrate probe norcarane: evidence for a stepwise reaction.
J Am Chem Soc. 2001 Dec 5;123(48):11831-7
PMID: 11724588
-
Chaotic mixer for microchannels.
Science. 2002 Jan 25;295(5555):647-51
PMID: 11809963
-
Design and characterization of immobilized enzymes in microfluidic systems.
Anal Chem. 2002 Jan 15;74(2):379-85
PMID: 11811412
-
Artificial blood.
Science. 2002 Feb 8;295(5557):1002-5
PMID: 11834811
-
Ribonuclease A.
Chem Rev. 1998 May 7;98(3):1045-1066
PMID: 11848924
-
Rapid compaction during RNA folding.
Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4266-71
PMID: 11929997
-
The rate-limiting step in the folding of a large ribozyme without kinetic traps.
Proc Natl Acad Sci U S A. 2002 Jun 25;99(13):8518-23
PMID: 12084911
-
Advances in proteomic technologies.
Annu Rev Biomed Eng. 2002;4:349-73
PMID: 12117762
-
Poly(dimethylsiloxane) as a material for fabricating microfluidic devices.
Acc Chem Res. 2002 Jul;35(7):491-9
PMID: 12118988
-
Single-turnover kinetics of Saccharomyces cerevisiae inorganic pyrophosphatase.
Biochemistry. 2002 Oct 8;41(40):12025-31
PMID: 12356302
-
A microfluidic system for controlling reaction networks in time.
Angew Chem Int Ed Engl. 2003 Feb 17;42(7):768-72
PMID: 12596195
-
Micromixer-based time-resolved NMR: applications to ubiquitin protein conformation.
Anal Chem. 2003 Feb 15;75(4):956-60
PMID: 12622391
-
A miniaturized, parallel, serially diluted immunoassay for analyzing multiple antigens.
J Am Chem Soc. 2003 May 7;125(18):5294-5
PMID: 12720439
-
Experimental test of scaling of mixing by chaotic advection in droplets moving through microfluidic channels.
Appl Phys Lett. 2003 Dec 1;83(12):4664-4666
PMID: 17940580
-
Value of general Acid-base catalysis to ribonuclease a.
J Am Chem Soc. 1994 Jun;116(12):5467-8
PMID: 21391696
-
A simple test for inactivation of an enzyme during assay.
Biochim Biophys Acta. 1965 Jul 29;105(1):193-5
PMID: 4221326
-
Partial liquid ventilation with perflubron in premature infants with severe respiratory distress syndrome. The LiquiVent Study Group.
N Engl J Med. 1996 Sep 12;335(11):761-7
PMID: 8778584
-
Kinetic measurement of the step size of DNA unwinding by Escherichia coli UvrD helicase.
Science. 1997 Jan 17;275(5298):377-80
PMID: 8994032
-
Submillisecond protein folding kinetics studied by ultrarapid mixing.
Proc Natl Acad Sci U S A. 1997 Mar 4;94(5):1779-84
PMID: 9050855
-
A continuous-flow capillary mixing method to monitor reactions on the microsecond time scale.
Biophys J. 1998 May;74(5):2714-21
PMID: 9591695
-
An integrated nanoliter DNA analysis device.
Science. 1998 Oct 16;282(5388):484-7
PMID: 9774277