Abstract
Hydroxyl groups of serine and threonine, and to some extent also tyrosine are usually located on or near the surface of proteins. NMR observations of the hydroxyl protons is therefore of interest to support investigations of the protein surface in solution, and knowledge of the hydroxyl NMR lines is indispensable as a reference for studies of protein hydration in solution. In this paper, solvent suppression schemes recently developed for observation of hydration water resonances were used to observe hydroxyl protons of serine, threonine and tyrosine in aqueous solutions of small model peptides and the protein basic pancreatic trypsin inhibitor (BPTI). The chemical shifts of the hydroxyl protons of serine and threonine were found to be between 5.4 and 6.2 ppm, with random-coil shifts at 4 degrees C of 5.92 ppm and 5.88 ppm, respectively, and those of tyrosine between 9.6 and 10.1 ppm, with a random-coil shift of 9.78 ppm. Since these spectral regions are virtually free of other polypeptide 1H NMR signals, cross peaks with the hydroxyl protons are usually well separated even in homonuclear two-dimensional 1H NMR spectra. To illustrate the practical use of hydroxyl proton NMR in polypeptides, the conformations of the side-chain hydroxyl groups in BPTI were characterized by measurements of nuclear Overhauser effects and scalar coupling constants involving the hydroxyl protons. In addition, hydroxyl proton exchange rates were measured as a function of pH, where simple first-order rate processes were observed for both acid- and base-catalysed exchange of all but one of the hydroxyl-bearing residues in BPTI. For the conformations of the individual Ser, Thr and Tyr side chains characterized in the solution structure with the use of hydroxyl proton NMR, both exact coincidence and significant differences relative to the corresponding BPTI crystal structure data were observed.
MeSH Terms
Amino Acids/chemistry
Aprotinin/chemistry
Magnetic Resonance Spectroscopy
Protein Conformation
Protons
Chemicals
Amino Acids
Protons
Aprotinin
Authors & Affiliations
3 authors, click to expand affiliations / ORCID
Liepinsh E
Institut für Molekularbiologie und Biophysik, Eidgenössische Technische Hochschule-Hönggerberg, Zürich, Switzerland.
Otting G
Wüthrich K
References (14)
14 references, click to expand
-
Capping and alpha-helix stability.
Nature. 1989 Nov 16;342(6247):296-9
PMID: 2812029
-
Structure of form III crystals of bovine pancreatic trypsin inhibitor.
J Mol Biol. 1987 Dec 5;198(3):469-80
PMID: 2448484
-
Efficient computation of three-dimensional protein structures in solution from nuclear magnetic resonance data using the program DIANA and the supporting programs CALIBA, HABAS and GLOMSA.
J Mol Biol. 1991 Feb 5;217(3):517-30
PMID: 1847217
-
Amino acid preferences for specific locations at the ends of alpha helices.
Science. 1988 Jun 17;240(4859):1648-52
PMID: 3381086
-
Structure determination of the Antp (C39----S) homeodomain from nuclear magnetic resonance data in solution using a novel strategy for the structure calculation with the programs DIANA, CALIBA, HABAS and GLOMSA.
J Mol Biol. 1991 Feb 5;217(3):531-40
PMID: 1671604
-
Proton magnetic resonance study of the hydration of glucose.
Nature. 1976 Jun 3;261(5559):435-6
PMID: 934279
-
Protein hydration in aqueous solution.
Science. 1991 Nov 15;254(5034):974-80
PMID: 1948083
-
Protein hydration studied with homonuclear 3D 1H NMR experiments.
J Biomol NMR. 1991 Jul;1(2):209-15
PMID: 1726782
-
The solution conformation of sialyl-alpha (2----6)-lactose studied by modern NMR techniques and Monte Carlo simulations.
J Biomol NMR. 1992 Mar;2(2):109-36
PMID: 1422148
-
Amide protein exchange and surface conformation of the basic pancreatic trypsin inhibitor in solution. Studies with two-dimensional nuclear magnetic resonance.
J Mol Biol. 1982 Sep 15;160(2):343-61
PMID: 6184480
-
Proton exchange and base-pair kinetics of poly(rA).poly(rU) and poly(rI).poly(rC).
J Mol Biol. 1985 Jul 5;184(1):165-78
PMID: 2993629
-
Three-dimensional structure of the neurotoxin ATX Ia from Anemonia sulcata in aqueous solution determined by nuclear magnetic resonance spectroscopy.
Proteins. 1989;6(4):357-71
PMID: 2576133
-
Hydrogen exchange and structural dynamics of proteins and nucleic acids.
Q Rev Biophys. 1983 Nov;16(4):521-655
PMID: 6204354
-
Structure of bovine pancreatic trypsin inhibitor. Results of joint neutron and X-ray refinement of crystal form II.
J Mol Biol. 1984 Dec 5;180(2):301-29
PMID: 6210373