Home LiteratureArticle Details
PMID: 1312710 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The initiation accuracy of the SV40 early transcription is determined by the functional domains of two TATA elements.

Nucleic acids research ·Vol. 20 ·No. 5 ·1992-03-11 ·Pages 975-82

Pauly M, Treger M, Westhof E, Chambon P

Abstract

To locate the boundaries of the TATA element in the SV40 early promoter, point mutations have been constructed such as to cover the whole T + A-rich region of the replication origin. The effects of these mutations on the rate of transcription in vivo show that this region actually contains two TATA elements I and II, each independently directing the accurate initiation of transcription from a specified set of start sites, EES1 and EES2, respectively. The sequence of TATA element I fits best with the compiled 'consensus' sequence found in eukaryotic gene promoters and is the most efficient in directing transcription initiation. Mutations which improve this fit can still increase the rate of transcription, confirming the theory of a correlation between the nucleotide sequence of a TATA element and its functional efficiency. Moreover, some mutations which simultaneously modify the angle of DNA curvature in the T + A-rich promoter region and the rate of transcription reveal a correlation between DNA bending and transcription initiation.

MeSH Terms
Base Sequence DNA Mutational Analysis DNA, Viral/chemistry,genetics Electrophoresis Genes, Viral/genetics HeLa Cells Humans Molecular Sequence Data Nucleic Acid Conformation Simian virus 40/genetics TATA Box/genetics Transcription, Genetic/genetics
Chemicals
DNA, Viral
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Pauly M
Laboratoire de Recherche sur le Cancer et les Maladies du Sang, Zone industrielle Grasbusch, Leudelange, Luxembourg.
Treger M
Westhof E
Chambon P
References (29)
29 references, click to expand
  1. A set of synthetic oligodeoxyribonucleotide primers for DNA sequencing in the plasmid vector pBR322.
    Gene. 1981 Dec;16(1-3):21-6 PMID: 6282692
  2. Identification of a promoter component involved in positioning the 5' termini of simian virus 40 early mRNAs.
    Proc Natl Acad Sci U S A. 1981 Jan;78(1):100-4 PMID: 6264425
  3. Transcription in vivo from SV40 early promoter deletion mutants without repression by large T antigen.
    J Mol Appl Genet. 1983;2(1):127-35 PMID: 6842119
  4. Characterization of a surrogate TATA box promoter that regulates in vitro transcription of the simian virus 40 major late gene.
    Mol Cell Biol. 1985 Mar;5(3):591-4 PMID: 2985959
  5. Requirement of stereospecific alignments for initiation from the simian virus 40 early promoter.
    Nature. 1986 Jan 9-15;319(6049):121-6 PMID: 3001535
  6. Multiple sequence motifs are involved in SV40 enhancer function.
    EMBO J. 1986 Feb;5(2):387-97 PMID: 3011406
  7. The A+T-rich sequence of the simian virus 40 origin is essential for replication and is involved in bending of the viral DNA.
    J Virol. 1987 Jul;61(7):2322-5 PMID: 3035231
  8. Transcription elements and factors of RNA polymerase B promoters of higher eukaryotes.
    CRC Crit Rev Biochem. 1988;23(2):77-120 PMID: 3048889
  9. Compilation and analysis of eukaryotic POL II promoter sequences.
    Nucleic Acids Res. 1986 Dec 22;14(24):10009-26 PMID: 3808945
  10. The regulation of transcription initiation in bacteria.
    Annu Rev Genet. 1985;19:355-87 PMID: 3936407
  11. T antigen repression of SV40 early transcription from two promoters.
    Cell. 1981 Dec;27(3 Pt 2):603-13 PMID: 6101224
  12. Sequencing end-labeled DNA with base-specific chemical cleavages.
    Methods Enzymol. 1980;65(1):499-560 PMID: 6246368
  13. The SV40 early region TATA box is required for accurate in vitro initiation of transcription.
    Nature. 1981 Mar 26;290(5804):310-5 PMID: 6259539
  14. SV40 gene expression is modulated by the cooperative binding of T antigen to DNA.
    Cell. 1981 Aug;25(2):373-84 PMID: 6269743
  15. Initiation and regulation of simian virus 40 early transcription in vitro.
    J Virol. 1982 Feb;41(2):449-61 PMID: 6281460
  16. Mutational dissection of the 21 bp repeat region of the SV40 early promoter reveals that it contains overlapping elements of the early-early and late-early promoters.
    Nucleic Acids Res. 1984 Jan 25;12(2):915-32 PMID: 6320125
  17. Organization and expression of eucaryotic split genes coding for proteins.
    Annu Rev Biochem. 1981;50:349-83 PMID: 6791577
  18. Transcription from the SV40 early-early and late-early overlapping promoters in the absence of DNA replication.
    EMBO J. 1983;2(9):1605-11 PMID: 11892819
  19. Why bend DNA?
    Cell. 1990 Jan 26;60(2):177-80 PMID: 2404609
  20. Protein-induced bending of the simian virus 40 origin of replication.
    J Mol Biol. 1988 Oct 20;203(4):1009-19 PMID: 2850367
  21. All six GC-motifs of the SV40 early upstream element contribute to promoter activity in vivo and in vitro.
    EMBO J. 1985 Dec 30;4(13B):3839-49 PMID: 3004974
  22. Influence of the sequence-dependent flexure of DNA on transcription in E. coli.
    Nucleic Acids Res. 1989 Nov 25;17(22):9447-68 PMID: 2685760
  23. DNA structure. Curves with a function.
    Nature. 1989 Sep 21;341(6239):184-5 PMID: 2779666
  24. The adenine-thymine domain of the simian virus 40 core origin directs DNA bending and coordinately regulates DNA replication.
    Mol Cell Biol. 1986 Dec;6(12):4578-84 PMID: 3025662
  25. Sequence distributions associated with DNA curvature are found upstream of strong E. coli promoters.
    Nucleic Acids Res. 1987 Jan 26;15(2):785-96 PMID: 3547329
  26. Oligonucleotide-directed mutagenesis by microscale 'shot-gun' gene synthesis.
    Nucleic Acids Res. 1985 May 10;13(9):3305-16 PMID: 3889852
  27. DNA structure. Bent molecules--how and why?
    Nature. 1986 Apr 10-16;320(6062):487-8 PMID: 3960132
  28. In vivo sequence requirements of the SV40 early promotor region.
    Nature. 1981 Mar 26;290(5804):304-10 PMID: 6259538
  29. The locus of sequence-directed and protein-induced DNA bending.
    Nature. 1984 Apr 5-11;308(5959):509-13 PMID: 6323997
Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
0305-1048
Published
1992-03-11
Pages
975-82
Language
English
Region
England
NLM ID
0411011
PMCID
PMC312079
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com