Home LiteratureArticle Details
PMID: 12970466 Published · ppublish English Journal Article Review

Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species.

Challis GL, Hopwood DA

Abstract

In this article we briefly review theories about the ecological roles of microbial secondary metabolites and discuss the prevalence of multiple secondary metabolite production by strains of Streptomyces, highlighting results from analysis of the recently sequenced Streptomyces coelicolor and Streptomyces avermitilis genomes. We address this question: Why is multiple secondary metabolite production in Streptomyces species so commonplace? We argue that synergy or contingency in the action of individual metabolites against biological competitors may, in some cases, be a powerful driving force for the evolution of multiple secondary metabolite production. This argument is illustrated with examples of the coproduction of synergistically acting antibiotics and contingently acting siderophores: two well-known classes of secondary metabolite. We focus, in particular, on the coproduction of beta-lactam antibiotics and beta-lactamase inhibitors, the coproduction of type A and type B streptogramins, and the coregulated production and independent uptake of structurally distinct siderophores by species of Streptomyces. Possible mechanisms for the evolution of multiple synergistic and contingent metabolite production in Streptomyces species are discussed. It is concluded that the production by Streptomyces species of two or more secondary metabolites that act synergistically or contingently against biological competitors may be far more common than has previously been recognized, and that synergy and contingency may be common driving forces for the evolution of multiple secondary metabolite production by these sessile saprophytes.

MeSH Terms
Anti-Bacterial Agents/biosynthesis Ecosystem Evolution, Molecular Multigene Family Siderophores/physiology Streptomyces/genetics,metabolism,physiology
Chemicals
Anti-Bacterial Agents Siderophores
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Challis Gregory L
Department of Chemistry, University of Warwick, Coventry CV4 7AL, United Kingdom. G.L.Challis@warwick.ac.uk
Hopwood David A
References (39)
39 references, click to expand
  1. Selfish operons and speciation by gene transfer.
    Trends Microbiol. 1997 Sep;5(9):355-9 PMID: 9294891
  2. Identification and analysis of genes from Streptomyces pristinaespiralis encoding enzymes involved in the biosynthesis of the 4-dimethylamino-L-phenylalanine precursor of pristinamycin I.
    Mol Microbiol. 1997 Jan;23(2):191-202 PMID: 9044253
  3. Characterization of an iron-dependent regulatory protein (IdeR) of Mycobacterium tuberculosis as a functional homolog of the diphtheria toxin repressor (DtxR) from Corynebacterium diphtheriae.
    Infect Immun. 1995 Nov;63(11):4284-9 PMID: 7591059
  4. Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2).
    Nature. 2002 May 9;417(6885):141-7 PMID: 12000953
  5. Sites of interaction of streptogramin A and B antibiotics in the peptidyl transferase loop of 23 S rRNA and the synergism of their inhibitory mechanisms.
    J Mol Biol. 1999 Feb 19;286(2):375-87 PMID: 9973558
  6. Genes specific for the biosynthesis of clavam metabolites antipodal to clavulanic acid are clustered with the gene for clavaminate synthase 1 in Streptomyces clavuligerus.
    Antimicrob Agents Chemother. 1999 May;43(5):1215-24 PMID: 10223939
  7. The biosynthetic genes for clavulanic acid and cephamycin production occur as a 'super-cluster' in three Streptomyces.
    FEMS Microbiol Lett. 1993 Jun 15;110(2):239-42 PMID: 8349096
  8. Widespread and persistent populations of a major new marine actinomycete taxon in ocean sediments.
    Appl Environ Microbiol. 2002 Oct;68(10):5005-11 PMID: 12324350
  9. Coelichelin, a new peptide siderophore encoded by the Streptomyces coelicolor genome: structure prediction from the sequence of its non-ribosomal peptide synthetase.
    FEMS Microbiol Lett. 2000 Jun 15;187(2):111-4 PMID: 10856642
  10. The evolution of secondary metabolism - a unifying model.
    Mol Microbiol. 2000 Sep;37(5):989-94 PMID: 10972818
  11. Polyene macrolide antibiotics and their applications in human therapy.
    Curr Med Chem. 2003 Feb;10(3):211-23 PMID: 12570708
  12. Cloning and analysis of structural genes from Streptomyces pristinaespiralis encoding enzymes involved in the conversion of pristinamycin IIB to pristinamycin IIA (PIIA): PIIA synthase and NADH:riboflavin 5'-phosphate oxidoreductase.
    J Bacteriol. 1995 Sep;177(18):5206-14 PMID: 7665509
  13. Biosynthesis and molecular genetics of cephamycins. Cephamycins produced by actinomycetes.
    Antonie Van Leeuwenhoek. 1999 Jan-Feb;75(1-2):109-24 PMID: 10422584
  14. Novel plant-microbe rhizosphere interaction involving Streptomyces lydicus WYEC108 and the pea plant (Pisum sativum).
    Appl Environ Microbiol. 2002 May;68(5):2161-71 PMID: 11976085
  15. Enterobactin: the characteristic catecholate siderophore of Enterobacteriaceae is produced by Streptomyces species.(1).
    FEMS Microbiol Lett. 2001 Mar 15;196(2):147-51 PMID: 11267771
  16. Genetics and assembly line enzymology of siderophore biosynthesis in bacteria.
    Microbiol Mol Biol Rev. 2002 Jun;66(2):223-49 PMID: 12040125
  17. Myxochelin A, a new iron-chelating compound from Angiococcus disciformis (Myxobacterales). Production, isolation, physico-chemical and biological properties.
    J Antibiot (Tokyo). 1989 Jan;42(1):14-7 PMID: 2493439
  18. Fatal attraction.
    Nature. 1993 Dec 2;366(6454):414-5 PMID: 8247147
  19. A regulatory gene (ccaR) required for cephamycin and clavulanic acid production in Streptomyces clavuligerus: amplification results in overproduction of both beta-lactam compounds.
    J Bacteriol. 1997 Mar;179(6):2053-9 PMID: 9068654
  20. Purification of the two-enzyme system catalyzing the oxidation of the D-proline residue of pristinamycin IIB during the last step of pristinamycin IIA biosynthesis.
    J Bacteriol. 1995 Sep;177(18):5199-205 PMID: 7665508
  21. Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis.
    Nat Biotechnol. 2003 May;21(5):526-31 PMID: 12692562
  22. Two isozymes of clavaminate synthase central to clavulanic acid formation: cloning and sequencing of both genes from Streptomyces clavuligerus.
    Biochemistry. 1992 Dec 22;31(50):12648-57 PMID: 1472501
  23. Functional analysis of the gene encoding the clavaminate synthase 2 isoenzyme involved in clavulanic acid biosynthesis in Streptomyces clavuligerus.
    J Bacteriol. 1995 Mar;177(5):1307-14 PMID: 7868606
  24. Streptogramin B biosynthesis in Streptomyces pristinaespiralis and Streptomyces virginiae: molecular characterization of the last structural peptide synthetase gene.
    Antimicrob Agents Chemother. 1997 Sep;41(9):1904-9 PMID: 9303382
  25. Antibiotics of the virginiamycin family, inhibitors which contain synergistic components.
    Microbiol Rev. 1979 Jun;43(2):145-92 PMID: 117294
  26. Cluster organization of the genes of Streptomyces pristinaespiralis involved in pristinamycin biosynthesis and resistance elucidated by pulsed-field gel electrophoresis.
    J Appl Microbiol. 1999 Dec;87(6):939-948 PMID: 10692076
  27. Iron-hydroxamate uptake systems in Bacillus subtilis: identification of a lipoprotein as part of a binding protein-dependent transport system.
    Mol Microbiol. 1993 Apr;8(1):111-21 PMID: 8388528
  28. Biosynthesis and molecular genetics of clavulanic acid.
    Antonie Van Leeuwenhoek. 1999 Jan-Feb;75(1-2):125-33 PMID: 10422585
  29. Synergy and duality in peptide antibiotic mechanisms.
    Curr Opin Chem Biol. 1999 Dec;3(6):672-80 PMID: 10600730
  30. Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites.
    Proc Natl Acad Sci U S A. 2001 Oct 9;98(21):12215-20 PMID: 11572948
  31. Pristinamycin I biosynthesis in Streptomyces pristinaespiralis: molecular characterization of the first two structural peptide synthetase genes.
    J Bacteriol. 1997 Feb;179(3):705-13 PMID: 9006024
  32. Munumbicins, wide-spectrum antibiotics produced by Streptomyces NRRL 30562, endophytic on Kennedia nigriscans.
    Microbiology. 2002 Sep;148(Pt 9):2675-85 PMID: 12213914
  33. Adaptive evolution of highly mutable loci in pathogenic bacteria.
    Curr Biol. 1994 Jan 1;4(1):24-33 PMID: 7922307
  34. [Metabolic products of microorganisms. 65. Ferrioxamine from Eubacteriales].
    Arch Mikrobiol. 1968;62(3):257-63 PMID: 5709361
  35. Streptomycetes: a new model to study cell death.
    Int Microbiol. 2000 Sep;3(3):153-8 PMID: 11032307
  36. Why are secondary metabolites (natural products) biosynthesized?
    J Nat Prod. 1989 Nov-Dec;52(6):1189-208 PMID: 2693613
  37. The molecular basis of the inhibitory activities of type A and type B synergimycins and related antibiotics on ribosomes.
    J Antimicrob Chemother. 1989 Oct;24(4):485-507 PMID: 2515187
  38. Synergistic interaction of the streptogramins with the ribosome.
    Eur J Biochem. 1977 Apr 15;74(3):549-51 PMID: 323016
  39. Purification of peptide synthetases involved in pristinamycin I biosynthesis.
    J Bacteriol. 1997 Feb;179(3):697-704 PMID: 9006023
Article Info
Journal
Proceedings of the National Academy of Sciences of the United States of America
Abbr.
Proc Natl Acad Sci U S A
ISSN
0027-8424
Published
2003-11-25
Epub
2003-00-11
Pages
14555-61
Language
English
Region
United States
NLM ID
7505876
PMCID
PMC304118
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com