Abstract
The furA-katG region of Mycobacterium tuberculosis, encoding a Fur-like protein and the catalase-peroxidase, is highly conserved among mycobacteria. Both genes are induced upon oxidative stress. In this work we analyzed the M. tuberculosis furA promoter region. DNA fragments were cloned upstream of the luciferase reporter gene, and promoter activity in Mycobacterium smegmatis was measured in both the presence and absence of oxidative stress. The shortest fragment containing an inducible promoter extends 45 bp upstream of furA. In this region, -35 and -10 promoter consensus sequences can be identified, as well as a 23-bp AT-rich sequence that is conserved in the nonpathogenic but closely related M. smegmatis. M. tuberculosis FurA was purified and found to bind upstream of furA by gel shift analysis. A ca. 30-bp DNA sequence, centered on the AT-rich region, was essential for FurA binding and protected by FurA in footprinting analysis. Peroxide treatment of FurA abolished DNA binding. Three different AT-rich sequences mutagenized by site-directed mutagenesis were constructed. In each mutant, both M. tuberculosis FurA binding in vitro and pfurA regulation upon oxidative-stress in M. smegmatis were abolished. Thus, pfurA is an oxidative stress-responsive promoter controlled by the FurA protein.
MeSH Terms
Bacterial Proteins/genetics,isolation & purification,metabolism
Base Sequence
Binding Sites
Cloning, Molecular
Conserved Sequence
DNA Footprinting
Gene Expression Regulation, Bacterial
Homeostasis
Luciferases/genetics,metabolism
Molecular Sequence Data
Mutation
Mycobacterium smegmatis/genetics,metabolism
Mycobacterium tuberculosis/genetics,metabolism
Oxidation-Reduction
Oxidative Stress
Promoter Regions, Genetic
Repressor Proteins/genetics,isolation & purification,metabolism
Sequence Homology, Nucleic Acid
Transcription, Genetic
Chemicals
Bacterial Proteins
Repressor Proteins
ferric uptake regulating proteins, bacterial
Luciferases
Authors & Affiliations
7 authors, click to expand affiliations / ORCID
Sala Claudia
Dipartimento di Genetica e di Biologia dei Microrganismi, Università di Milano, Milan, Italy.
Forti Francesca
Di Florio Elisabetta
Canneva Fabio
Milano Anna
Riccardi Giovanna
Ghisotti Daniela
References (31)
31 references, click to expand
-
The response of Pseudomonas aeruginosa to iron: genetics, biochemistry and virulence.
Mol Microbiol. 1999 Nov;34(3):399-413
PMID: 10564483
-
Opening the iron box: transcriptional metalloregulation by the Fur protein.
J Bacteriol. 1999 Oct;181(20):6223-9
PMID: 10515908
-
The DNA-binding characteristics of the Streptomyces reticuli regulator FurS depend on the redox state of its cysteine residues.
Mol Gen Genet. 2000 Oct;264(3):341-53
PMID: 11085275
-
H2O2-sensitive fur-like repressor CatR regulating the major catalase gene in Streptomyces coelicolor.
J Biol Chem. 2000 Dec 8;275(49):38254-60
PMID: 10991944
-
Mapping of Mycobacterium tuberculosis katG promoters and their differential expression in infected macrophages.
J Bacteriol. 2001 Jul;183(13):4033-9
PMID: 11395468
-
Regulation of catalase-peroxidase (KatG) expression, isoniazid sensitivity and virulence by furA of Mycobacterium tuberculosis.
Mol Microbiol. 2001 May;40(4):879-89
PMID: 11401695
-
Conformational changes of the ferric uptake regulation protein upon metal activation and DNA binding; first evidence of structural homologies with the diphtheria toxin repressor.
J Mol Biol. 2001 Jun 29;310(1):83-91
PMID: 11419938
-
Transcriptional regulation of furA and katG upon oxidative stress in Mycobacterium smegmatis.
J Bacteriol. 2001 Dec;183(23):6801-6
PMID: 11698368
-
Autoregulation of Helicobacter pylori Fur revealed by functional analysis of the iron-binding site.
Mol Microbiol. 2002 Nov;46(4):1107-22
PMID: 12421315
-
A new method for sequencing DNA.
Proc Natl Acad Sci U S A. 1977 Feb;74(2):560-4
PMID: 265521
-
Operator sequences of the aerobactin operon of plasmid ColV-K30 binding the ferric uptake regulation (fur) repressor.
J Bacteriol. 1987 Jun;169(6):2624-30
PMID: 3294800
-
Ferric uptake regulation protein acts as a repressor, employing iron (II) as a cofactor to bind the operator of an iron transport operon in Escherichia coli.
Biochemistry. 1987 Aug 25;26(17):5471-7
PMID: 2823881
-
Metal ion regulation of gene expression. Fur repressor-operator interaction at the promoter region of the aerobactin system of pColV-K30.
J Mol Biol. 1988 Oct 20;203(4):875-84
PMID: 3062182
-
Structural dynamics and functional domains of the fur protein.
Biochemistry. 1991 Aug 20;30(33):8201-10
PMID: 1868094
-
Role of iron in regulation of virulence genes.
Clin Microbiol Rev. 1993 Apr;6(2):137-49
PMID: 8472246
-
Fur regulon in gram-negative bacteria. Identification and characterization of new iron-regulated Escherichia coli genes by a fur titration assay.
J Mol Biol. 1994 Feb 18;236(2):531-45
PMID: 8107138
-
Control of transcription termination by an RNA factor in bacteriophage P4 immunity: identification of the target sites.
J Bacteriol. 1995 Mar;177(6):1425-34
PMID: 7883698
-
Functional domains of the Escherichia coli ferric uptake regulator protein (Fur).
Mol Gen Genet. 1995 Apr 20;247(2):199-205
PMID: 7753029
-
The interaction of the ferric uptake regulation protein with DNA.
Biochem Biophys Res Commun. 1995 Jul 26;212(3):784-92
PMID: 7626111
-
Gene repression by the ferric uptake regulator in Pseudomonas aeruginosa: cycle selection of iron-regulated genes.
Proc Natl Acad Sci U S A. 1996 Apr 30;93(9):4409-14
PMID: 8633080
-
A study of mycobacterial transcriptional apparatus: identification of novel features in promoter elements.
J Bacteriol. 1996 Aug;178(16):4847-53
PMID: 8759847
-
The role of fur in the acid tolerance response of Salmonella typhimurium is physiologically and genetically separable from its role in iron acquisition.
J Bacteriol. 1996 Oct;178(19):5683-91
PMID: 8824613
-
An operon containing fumC and sodA encoding fumarase C and manganese superoxide dismutase is controlled by the ferric uptake regulator in Pseudomonas aeruginosa: fur mutants produce elevated alginate levels.
J Bacteriol. 1997 Mar;179(5):1452-9
PMID: 9045799
-
Metalloregulation in vitro of the aerobactin promoter of Escherichia coli by the Fur (ferric uptake regulation) protein.
Mol Microbiol. 1997 Nov;26(4):799-808
PMID: 9427409
-
X-ray absorption spectroscopy of a new zinc site in the fur protein from Escherichia coli.
Biochemistry. 1998 Feb 24;37(8):2564-71
PMID: 9485406
-
Deciphering the biology of Mycobacterium tuberculosis from the complete genome sequence.
Nature. 1998 Jun 11;393(6685):537-44
PMID: 9634230
-
Bacillus subtilis contains multiple Fur homologues: identification of the iron uptake (Fur) and peroxide regulon (PerR) repressors.
Mol Microbiol. 1998 Jul;29(1):189-98
PMID: 9701813
-
Oxidative stress response and characterization of the oxyR-ahpC and furA-katG loci in Mycobacterium marinum.
J Bacteriol. 1998 Sep;180(18):4856-64
PMID: 9733688
-
The mycelium-associated Streptomyces reticuli catalase-peroxidase, its gene and regulation by FurS.
Microbiology. 1999 Mar;145 ( Pt 3):549-59
PMID: 10217488
-
The ferric uptake regulation (Fur) repressor is a zinc metalloprotein.
Biochemistry. 1999 May 18;38(20):6559-69
PMID: 10350474
-
Fur positive regulation of iron superoxide dismutase in Escherichia coli: functional analysis of the sodB promoter.
J Bacteriol. 2000 Jul;182(13):3802-8
PMID: 10850997