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PMID: 12824431 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S.

NORSp: Predictions of long regions without regular secondary structure.

Nucleic acids research ·Vol. 31 ·No. 13 ·2003-07-01 ·Pages 3833-5

Liu J, Rost B

Abstract

Many structurally flexible regions play important roles in biological processes. It has been shown that extended loopy regions are very abundant in the protein universe and that they have been conserved through evolution. Here, we present NORSp, a publicly available predictor for disordered regions in protein. Specifically, NORSp predicts long regions with NO Regular Secondary structure. Upon user submission of a protein sequence, NORSp will analyse the protein for its secondary structure, presence of transmembrane helices and coiled-coil. It will then return email to the user about the presence and position of disordered regions. NORSp can be accessed from http://cubic.bioc.columbia.edu/services/NORSp/.

MeSH Terms
Internet Protein Structure, Secondary Proteins/chemistry,physiology Sequence Analysis, Protein/methods Software Software Design User-Computer Interface
Chemicals
Proteins
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Liu Jinfeng
CUBIC, Department of Biochemistry and Molecular Biophysics, Columbia University, 650 West 168th Street BB217, New York, NY 10032, USA.
Rost Burkhard
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
Published
2003-07-01
Pages
3833-5
Language
English
Region
England
NLM ID
0411011
PMCID
PMC168922
Subset
IM
Grants
NIGMS NIH HHS · P50 GM062413 · United States
NIGMS NIH HHS · R01 GM063029 · United States
NIGMS NIH HHS · 1-P50-GM62413-01 · United States
NIGMS NIH HHS · R01-GM63029-01 · United States
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