Home LiteratureArticle Details
PMID: 12805205 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

Molecular architecture of the ATP-dependent CodWX protease having an N-terminal serine active site.

The EMBO journal ·Vol. 22 ·No. 12 ·2003-06-16 ·Pages 2893-902

Kang MS, Kim SR, Kwack P, Lim BK, Ahn SW, Rho YM, Seong IS, Park SC, Eom SH, Cheong GW, Chung CH

Abstract

CodWX in Bacillus subtilis is an ATP-dependent, N-terminal serine protease, consisting of CodW peptidase and CodX ATPase. Here we show that CodWX is an alkaline protease and has a distinct molecular architecture. ATP hydrolysis is required for the formation of the CodWX complex and thus for its proteolytic function. Remarkably, CodX has a 'spool-like' structure that is formed by interaction of the intermediate domains of two hexameric or heptameric rings. In the CodWX complex, CodW consisting of two stacked hexameric rings (WW) binds to either or both ends of a CodX double ring (XX), forming asymmetric (WWXX) or symmetric cylindrical particles (WWXXWW). CodWX can also form an elongated particle, in which an additional CodX double ring is bound to the symmetric particle (WWXXWWXX). In addition, CodWX is capable of degrading EzrA, an inhibitor of FtsZ ring formation, implicating it in the regulation of cell division. Thus, CodWX appears to constitute a new type of protease that is distinct from other ATP-dependent proteases in its structure and proteolytic mechanism.

MeSH Terms
ATP-Dependent Proteases Adenosine Triphosphate/metabolism Bacterial Proteins/genetics,metabolism Binding Sites Heat-Shock Proteins/chemistry,metabolism Macromolecular Substances Protein Structure, Quaternary Serine/chemistry,metabolism Serine Endopeptidases/chemistry,metabolism,ultrastructure
Chemicals
Bacterial Proteins EzrA protein, Bacillus subtilis Heat-Shock Proteins Macromolecular Substances Serine Adenosine Triphosphate ATP-Dependent Proteases CodWX protease Serine Endopeptidases
Authors & Affiliations
11 authors, click to expand affiliations / ORCID
Kang Min Suk
NRL of Protein Biochemistry, School of Biological Sciences, Seoul National University, Seoul 151-742, Korea.
Kim Soon Rae
Kwack Pyeongsu
Lim Byung Kook
Ahn Sung Won
Rho Young Min
Seong Ihn Sik
Park Seong-Chul
Eom Soo Hyun
Cheong Gang-Won
Chung Chin Ha
References (52)
52 references, click to expand
  1. Identification and characterization of a negative regulator of FtsZ ring formation in Bacillus subtilis.
    Proc Natl Acad Sci U S A. 1999 Aug 17;96(17):9642-7 PMID: 10449747
  2. ATP-dependent degradation of SulA, a cell division inhibitor, by the HslVU protease in Escherichia coli.
    FEBS Lett. 1999 Jul 30;456(1):211-4 PMID: 10452560
  3. Proteolytic activity of the ATP-dependent protease HslVU can be uncoupled from ATP hydrolysis.
    J Biol Chem. 1997 Aug 22;272(34):21364-72 PMID: 9261150
  4. Cleavage of structural proteins during the assembly of the head of bacteriophage T4.
    Nature. 1970 Aug 15;227(5259):680-5 PMID: 5432063
  5. Overexpression of the hslVU operon suppresses SOS-mediated inhibition of cell division in Escherichia coli.
    FEBS Lett. 1997 Sep 8;414(2):402-4 PMID: 9315728
  6. The mechanism and functions of ATP-dependent proteases in bacterial and animal cells.
    Eur J Biochem. 1992 Jan 15;203(1-2):9-23 PMID: 1730246
  7. A gene required for nutritional repression of the Bacillus subtilis dipeptide permease operon.
    Mol Microbiol. 1995 Feb;15(4):689-702 PMID: 7783641
  8. Proteasome from Thermoplasma acidophilum: a threonine protease.
    Science. 1995 Apr 28;268(5210):579-82 PMID: 7725107
  9. Purification and characterization of the heat shock proteins HslV and HslU that form a new ATP-dependent protease in Escherichia coli.
    J Biol Chem. 1996 Jun 14;271(24):14035-40 PMID: 8662828
  10. Inhibition of proteasome activities and subunit-specific amino-terminal threonine modification by lactacystin.
    Science. 1995 May 5;268(5211):726-31 PMID: 7732382
  11. Characterization of energy-dependent proteases in bacteria.
    Biochem Biophys Res Commun. 1997 Dec 29;241(3):613-6 PMID: 9434756
  12. Structure and functions of the 20S and 26S proteasomes.
    Annu Rev Biochem. 1996;65:801-47 PMID: 8811196
  13. Nucleotide-dependent conformational changes in a protease-associated ATPase HsIU.
    Structure. 2001 Nov;9(11):1107-16 PMID: 11709174
  14. Crystal structure of heat shock locus V (HslV) from Escherichia coli.
    Proc Natl Acad Sci U S A. 1997 Jun 10;94(12):6070-4 PMID: 9177170
  15. ATP binding, but not its hydrolysis, is required for assembly and proteolytic activity of the HslVU protease in Escherichia coli.
    Biochem Biophys Res Commun. 1997 Sep 18;238(2):581-5 PMID: 9299555
  16. At sixes and sevens: characterization of the symmetry mismatch of the ClpAP chaperone-assisted protease.
    J Struct Biol. 1998 Nov;123(3):248-59 PMID: 9878579
  17. In vivo function of the proteasome in the ubiquitin pathway.
    EMBO J. 1992 Aug;11(8):3077-80 PMID: 1322295
  18. Six-fold rotational symmetry of ClpQ, the E. coli homolog of the 20S proteasome, and its ATP-dependent activator, ClpY.
    FEBS Lett. 1996 Dec 2;398(2-3):274-8 PMID: 8977122
  19. Proteases and their targets in Escherichia coli.
    Annu Rev Genet. 1996;30:465-506 PMID: 8982462
  20. The structure of ClpP at 2.3 A resolution suggests a model for ATP-dependent proteolysis.
    Cell. 1997 Nov 14;91(4):447-56 PMID: 9390554
  21. Mutagenesis of two N-terminal Thr and five Ser residues in HslV, the proteolytic component of the ATP-dependent HslVU protease.
    FEBS Lett. 1997 Jul 21;412(1):57-60 PMID: 9257689
  22. PAN, the proteasome-activating nucleotidase from archaebacteria, is a protein-unfolding molecular chaperone.
    Nat Cell Biol. 2000 Nov;2(11):833-9 PMID: 11056539
  23. Regulatory subunits of energy-dependent proteases.
    Cell. 1997 Nov 14;91(4):435-8 PMID: 9390551
  24. The ATP-dependent HslVU protease from Escherichia coli is a four-ring structure resembling the proteasome.
    Nat Struct Biol. 1997 Feb;4(2):133-9 PMID: 9033594
  25. The ATP-dependent CodWX (HslVU) protease in Bacillus subtilis is an N-terminal serine protease.
    EMBO J. 2001 Feb 15;20(4):734-42 PMID: 11179218
  26. Enzymatic and structural similarities between the Escherichia coli ATP-dependent proteases, ClpXP and ClpAP.
    J Biol Chem. 1998 May 15;273(20):12476-81 PMID: 9575205
  27. The HslU ATPase acts as a molecular chaperone in prevention of aggregation of SulA, an inhibitor of cell division in Escherichia coli.
    FEBS Lett. 2000 Jul 21;477(3):224-9 PMID: 10908725
  28. Ubiquitin-dependent protein degradation.
    Annu Rev Genet. 1996;30:405-39 PMID: 8982460
  29. Heptameric ring structure of the heat-shock protein ClpB, a protein-activated ATPase in Escherichia coli.
    J Mol Biol. 2000 Nov 10;303(5):655-66 PMID: 11061966
  30. Docking of components in a bacterial complex.
    Nature. 2000 Dec 7;408(6813):667-8 PMID: 11130060
  31. AAA+: A class of chaperone-like ATPases associated with the assembly, operation, and disassembly of protein complexes.
    Genome Res. 1999 Jan;9(1):27-43 PMID: 9927482
  32. The C-terminal tails of HslU ATPase act as a molecular switch for activation of HslV peptidase.
    J Biol Chem. 2002 Jul 19;277(29):25976-82 PMID: 12011053
  33. ATP hydrolysis by the proteasome regulatory complex PAN serves multiple functions in protein degradation.
    Mol Cell. 2003 Jan;11(1):69-78 PMID: 12535522
  34. The proteasome: paradigm of a self-compartmentalizing protease.
    Cell. 1998 Feb 6;92(3):367-80 PMID: 9476896
  35. The molecular chaperone TF55. Assessment of symmetry.
    FEBS Lett. 1994 Mar 21;341(2-3):152-5 PMID: 7907992
  36. Structure of 20S proteasome from yeast at 2.4 A resolution.
    Nature. 1997 Apr 3;386(6624):463-71 PMID: 9087403
  37. Visualization of substrate binding and translocation by the ATP-dependent protease, ClpXP.
    Mol Cell. 2000 Dec;6(6):1515-21 PMID: 11163224
  38. Crystal structure of DegP (HtrA) reveals a new protease-chaperone machine.
    Nature. 2002 Mar 28;416(6879):455-9 PMID: 11919638
  39. The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system.
    Genes Dev. 1998 May 1;12(9):1338-47 PMID: 9573050
  40. Translocation pathway of protein substrates in ClpAP protease.
    Proc Natl Acad Sci U S A. 2001 Apr 10;98(8):4328-33 PMID: 11287666
  41. The heat-shock protein HslVU from Escherichia coli is a protein-activated ATPase as well as an ATP-dependent proteinase.
    Eur J Biochem. 1997 Aug 1;247(3):1143-50 PMID: 9288941
  42. Crystal structures of the HslVU peptidase-ATPase complex reveal an ATP-dependent proteolysis mechanism.
    Structure. 2001 Feb 7;9(2):177-84 PMID: 11250202
  43. HslV-HslU: A novel ATP-dependent protease complex in Escherichia coli related to the eukaryotic proteasome.
    Proc Natl Acad Sci U S A. 1996 Jun 11;93(12):5808-13 PMID: 8650174
  44. Use of multivariate statistics in analysing the images of biological macromolecules.
    Ultramicroscopy. 1981;6(2):187-94 PMID: 7268930
  45. The EM Program Package: A Platform for Image Processing in Biological Electron Microscopy
    J Struct Biol. 1996 Oct;116(1):30-4 PMID: 8812976
  46. Identification and characterization of HsIV HsIU (ClpQ ClpY) proteins involved in overall proteolysis of misfolded proteins in Escherichia coli.
    EMBO J. 1996 Dec 16;15(24):6899-909 PMID: 9003766
  47. Effects of the cys mutations on structure and function of the ATP-dependent HslVU protease in Escherichia coli. The Cys287 to Val mutation in HslU uncouples the ATP-dependent proteolysis by HslvU from ATP hydrolysis.
    J Biol Chem. 1998 Sep 4;273(36):22929-35 PMID: 9722513
  48. Electron microscopy and image analysis of the multicatalytic proteinase.
    FEBS Lett. 1988 Dec 5;241(1-2):239-45 PMID: 2461878
  49. Proteases in Escherichia coli.
    Science. 1993 Oct 15;262(5132):372-4 PMID: 8211156
  50. Protein translocation channels in the proteasome and other proteases.
    Cell. 1997 Nov 14;91(4):431-4 PMID: 9390550
  51. The structures of HsIU and the ATP-dependent protease HsIU-HsIV.
    Nature. 2000 Feb 17;403(6771):800-5 PMID: 10693812
  52. Crystal and solution structures of an HslUV protease-chaperone complex.
    Cell. 2000 Nov 10;103(4):633-43 PMID: 11106733
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
2003-06-16
Pages
2893-902
Language
English
Region
England
NLM ID
8208664
PMCID
PMC162141
Subset
IM
Analysis Services
Analysis Services

Contact

No. 2 Wenbo Road, Zhangqiu District, Jinan, Shandong

Qilu Normal University · Genelibs Bioinformatics Lab

750 Shunhua Rd, Jinan

2F, Bldg F, University Science Park

Tel: 0531-88819269

WeChat Official Account

Follow our WeChat subscription account for real-time updates and the latest in medical and biological research.


Business Email

E-mail: product@genelibs.com