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PMID: 12691994 Published · ppublish English Journal Article Research Support, U.S. Gov't, Non-P.H.S.

Perfect phylogeny haplotyper: haplotype inferral using a tree model.

Bioinformatics (Oxford, England) ·Vol. 19 ·No. 6 ·2003-04-12 ·Pages 780-1

Chung RH, Gusfield D

Abstract

We have developed an efficient program, the Perfect Phylogeny Haplotyper (PPH) that takes in unphased population genotype data, and determines if that data can be explained by haplotype pairs that could have evolved on a perfect phylogeny.

MeSH Terms
Algorithms Gene Expression Profiling/methods Genetic Variation/genetics Haplotypes/genetics Internet Models, Genetic Phylogeny Software
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Chung Ren Hua
Department of Computer Science, 3051 Engineering II, University of California, One Shields Avenue, Davis, CA 95616, USA.
Gusfield Dan
Article Info
Journal
Bioinformatics (Oxford, England)
Abbr.
Bioinformatics
ISSN
1367-4803
DOI
10.1093/bioinformatics/btg078
Published
2003-04-12
Pages
780-1
Language
English
Region
England
NLM ID
9808944
Subset
IM
External Links
PubMed source DOI: 10.1093/bioinformatics/btg078 View journal details
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