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PMID: 12682026 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

The yeast Sgs1 helicase is differentially required for genomic and ribosomal DNA replication.

The EMBO journal ·Vol. 22 ·No. 8 ·2003-04-15 ·Pages 1939-49

Versini G, Comet I, Wu M, Hoopes L, Schwob E, Pasero P

Abstract

The members of the RecQ family of DNA helicases play conserved roles in the preservation of genome integrity. RecQ helicases are implicated in Bloom and Werner syndromes, which are associated with genomic instability and predisposition to cancers. The human BLM and WRN helicases are required for normal S phase progression. In contrast, Saccharomyces cerevisiae cells deleted for SGS1 grow with wild-type kinetics. To investigate the role of Sgs1p in DNA replication, we have monitored S phase progression in sgs1Delta cells. Unexpectedly, we find that these cells progress faster through S phase than their wild-type counterparts. Using bromodeoxyuridine incorporation and DNA combing, we show that replication forks are moving more rapidly in the absence of the Sgs1 helicase. However, completion of DNA replication is strongly retarded at the rDNA array of sgs1Delta cells, presumably because of their inability to prevent recombination at stalled forks, which are very abundant at this locus. These data suggest that Sgs1p is not required for processive DNA synthesis but prevents genomic instability by coordinating replication and recombination events during S phase.

MeSH Terms
Bromodeoxyuridine/metabolism Cell Cycle/physiology Cell Cycle Proteins Checkpoint Kinase 2 DNA Helicases/genetics,metabolism DNA Replication DNA, Ribosomal/genetics,metabolism DNA-Binding Proteins/metabolism Humans Protein Serine-Threonine Kinases/metabolism Rad52 DNA Repair and Recombination Protein RecQ Helicases Saccharomyces cerevisiae/physiology Saccharomyces cerevisiae Proteins/genetics,metabolism
Chemicals
Cell Cycle Proteins DNA, Ribosomal DNA-Binding Proteins FOB1 protein, S cerevisiae RAD52 protein, S cerevisiae Rad52 DNA Repair and Recombination Protein Saccharomyces cerevisiae Proteins Checkpoint Kinase 2 Protein Serine-Threonine Kinases RAD53 protein, S cerevisiae SGS1 protein, S cerevisiae DNA Helicases RecQ Helicases Bromodeoxyuridine
Authors & Affiliations
6 authors, click to expand affiliations / ORCID
Versini Gwennaelle
Institute of Molecular Genetics, CNRS and Université Montpellier II, 1919 route de Mende, 34293 Montpellier, France.
Comet Itys
Wu Michelle
Hoopes Laura
Schwob Etienne
Pasero Philippe
References (63)
63 references, click to expand
  1. Mutations in DNA replication genes reduce yeast life span.
    Mol Cell Biol. 2002 Jun;22(12):4136-46 PMID: 12024027
  2. Replication, recombination, and repair: going for the gold.
    Mol Cell. 2002 Mar;9(3):471-80 PMID: 11931756
  3. Maintenance of genome stability in Saccharomyces cerevisiae.
    Science. 2002 Jul 26;297(5581):552-7 PMID: 12142524
  4. Fork reversal and ssDNA accumulation at stalled replication forks owing to checkpoint defects.
    Science. 2002 Jul 26;297(5581):599-602 PMID: 12142537
  5. ATR homolog Mec1 promotes fork progression, thus averting breaks in replication slow zones.
    Science. 2002 Jul 26;297(5581):602-6 PMID: 12142538
  6. Role of SGS1 and SLX4 in maintaining rDNA structure in Saccharomyces cerevisiae.
    Curr Genet. 2002 Sep;41(6):389-400 PMID: 12228808
  7. RecQ helicases: at the heart of genetic stability.
    FEBS Lett. 2002 Oct 2;529(1):43-8 PMID: 12354611
  8. Single-molecule analysis reveals clustering and epigenetic regulation of replication origins at the yeast rDNA locus.
    Genes Dev. 2002 Oct 1;16(19):2479-84 PMID: 12368258
  9. Alternate pathways involving Sgs1/Top3, Mus81/ Mms4, and Srs2 prevent formation of toxic recombination intermediates from single-stranded gaps created by DNA replication.
    Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16887-92 PMID: 12475932
  10. A retarded rate of DNA chain growth in Bloom's syndrome.
    Proc Natl Acad Sci U S A. 1975 Feb;72(2):758-62 PMID: 1054854
  11. The localization of replication origins on ARS plasmids in S. cerevisiae.
    Cell. 1987 Nov 6;51(3):463-71 PMID: 2822257
  12. A replication fork barrier at the 3' end of yeast ribosomal RNA genes.
    Cell. 1988 Nov 18;55(4):637-43 PMID: 3052854
  13. Organization of replication of ribosomal DNA in Saccharomyces cerevisiae.
    Mol Cell Biol. 1988 Nov;8(11):4927-35 PMID: 3062373
  14. An abnormal profile of DNA replication intermediates in Bloom's syndrome.
    Cancer Res. 1990 Jun 1;50(11):3141-5 PMID: 2110504
  15. A group of interacting yeast DNA replication genes.
    Genes Dev. 1991 Jun;5(6):958-69 PMID: 2044962
  16. CLB5: a novel B cyclin from budding yeast with a role in S phase.
    Genes Dev. 1992 Sep;6(9):1695-706 PMID: 1387626
  17. Impaired S-phase transit of Werner syndrome cells expressed in lymphoblastoid cell lines.
    Exp Cell Res. 1992 Oct;202(2):267-73 PMID: 1327851
  18. CLB5 and CLB6, a new pair of B cyclins involved in DNA replication in Saccharomyces cerevisiae.
    Genes Dev. 1993 Jul;7(7A):1160-75 PMID: 8319908
  19. The yeast type I topoisomerase Top3 interacts with Sgs1, a DNA helicase homolog: a potential eukaryotic reverse gyrase.
    Mol Cell Biol. 1994 Dec;14(12):8391-8 PMID: 7969174
  20. Sgs1: a eukaryotic homolog of E. coli RecQ that interacts with topoisomerase II in vivo and is required for faithful chromosome segregation.
    Cell. 1995 Apr 21;81(2):253-60 PMID: 7736577
  21. DNA replication fork pause sites dependent on transcription.
    Science. 1996 May 17;272(5264):1030-3 PMID: 8638128
  22. A yeast gene product, Fob1 protein, required for both replication fork blocking and recombinational hotspot activities.
    Genes Cells. 1996 May;1(5):465-74 PMID: 9078378
  23. Holliday junctions accumulate in replication mutants via a RecA homolog-independent mechanism.
    Cell. 1997 Jul 11;90(1):87-96 PMID: 9230305
  24. Dynamic molecular combing: stretching the whole human genome for high-resolution studies.
    Science. 1997 Sep 5;277(5331):1518-23 PMID: 9278517
  25. Extrachromosomal rDNA circles--a cause of aging in yeast.
    Cell. 1997 Dec 26;91(7):1033-42 PMID: 9428525
  26. Bloom's and Werner's syndrome genes suppress hyperrecombination in yeast sgs1 mutant: implication for genomic instability in human diseases.
    Proc Natl Acad Sci U S A. 1998 Jul 21;95(15):8733-8 PMID: 9671747
  27. The Bloom's syndrome helicase unwinds G4 DNA.
    J Biol Chem. 1998 Oct 16;273(42):27587-92 PMID: 9765292
  28. A Mec1- and Rad53-dependent checkpoint controls late-firing origins of DNA replication.
    Nature. 1998 Oct 8;395(6702):615-8 PMID: 9783589
  29. Regulation of DNA-replication origins during cell-cycle progression.
    Nature. 1998 Oct 8;395(6702):618-21 PMID: 9783590
  30. The Saccharomyces cerevisiae Sgs1 helicase efficiently unwinds G-G paired DNAs.
    Nucleic Acids Res. 1999 May 1;27(9):1978-84 PMID: 10198430
  31. Human werner syndrome DNA helicase unwinds tetrahelical structures of the fragile X syndrome repeat sequence d(CGG)n.
    J Biol Chem. 1999 Apr 30;274(18):12797-802 PMID: 10212265
  32. Elimination of replication block protein Fob1 extends the life span of yeast mother cells.
    Mol Cell. 1999 Apr;3(4):447-55 PMID: 10230397
  33. Binding specificity determines polarity of DNA unwinding by the Sgs1 protein of S. cerevisiae.
    J Mol Biol. 1999 Jun 4;289(2):235-48 PMID: 10366502
  34. Activation of dormant origins of DNA replication in budding yeast.
    Genes Dev. 1999 Sep 15;13(18):2360-4 PMID: 10500092
  35. Requirement of yeast SGS1 and SRS2 genes for replication and transcription.
    Science. 1999 Dec 17;286(5448):2339-42 PMID: 10600744
  36. The Werner syndrome gene product co-purifies with the DNA replication complex and interacts with PCNA and topoisomerase I.
    J Biol Chem. 1999 Dec 31;274(53):37795-9 PMID: 10608841
  37. Bloom's syndrome gene suppresses premature ageing caused by Sgs1 deficiency in yeast.
    Genes Cells. 1999 Nov;4(11):619-25 PMID: 10620009
  38. The yeast Sgs1p helicase acts upstream of Rad53p in the DNA replication checkpoint and colocalizes with Rad53p in S-phase-specific foci.
    Genes Dev. 2000 Jan 1;14(1):81-96 PMID: 10640278
  39. RecQ family helicases: roles in cancer and aging.
    Curr Opin Genet Dev. 2000 Feb;10(1):32-8 PMID: 10679384
  40. The Saccharomyces Pif1p DNA helicase and the highly related Rrm3p have opposite effects on replication fork progression in ribosomal DNA.
    Cell. 2000 Feb 18;100(4):479-89 PMID: 10693764
  41. Mechanisms and consequences of replication fork arrest.
    Biochimie. 2000 Jan;82(1):5-17 PMID: 10717381
  42. The Bloom's syndrome gene product interacts with topoisomerase III.
    J Biol Chem. 2000 Mar 31;275(13):9636-44 PMID: 10734115
  43. BASC, a super complex of BRCA1-associated proteins involved in the recognition and repair of aberrant DNA structures.
    Genes Dev. 2000 Apr 15;14(8):927-39 PMID: 10783165
  44. Homologous recombination is responsible for cell death in the absence of the Sgs1 and Srs2 helicases.
    Nat Genet. 2000 Jun;25(2):192-4 PMID: 10835635
  45. Cell cycle regulation of the endogenous wild type Bloom's syndrome DNA helicase.
    Oncogene. 2000 May 25;19(23):2731-8 PMID: 10851073
  46. Architecture of the replication fork stalled at the 3' end of yeast ribosomal genes.
    Mol Cell Biol. 2000 Aug;20(15):5777-87 PMID: 10891513
  47. Replication protein A physically interacts with the Bloom's syndrome protein and stimulates its helicase activity.
    J Biol Chem. 2000 Aug 4;275(31):23500-8 PMID: 10825162
  48. Interaction between yeast sgs1 helicase and DNA topoisomerase III.
    J Biol Chem. 2000 Sep 1;275(35):26898-905 PMID: 10862619
  49. Is the MCM2-7 complex the eukaryotic DNA replication fork helicase?
    Curr Opin Genet Dev. 2001 Feb;11(1):64-70 PMID: 11163153
  50. The Saccharomyces cerevisiae WRN homolog Sgs1p participates in telomere maintenance in cells lacking telomerase.
    EMBO J. 2001 Feb 15;20(4):905-13 PMID: 11179234
  51. Evidence for a replication function of FFA-1, the Xenopus orthologue of Werner syndrome protein.
    J Cell Biol. 2001 Mar 5;152(5):985-96 PMID: 11238454
  52. SGS1 is required for telomere elongation in the absence of telomerase.
    Curr Biol. 2001 Jan 23;11(2):125-9 PMID: 11231130
  53. DNA helicase deficiencies associated with cancer predisposition and premature ageing disorders.
    Hum Mol Genet. 2001 Apr;10(7):741-6 PMID: 11257107
  54. Monitoring S phase progression globally and locally using BrdU incorporation in TK(+) yeast strains.
    Nucleic Acids Res. 2001 Apr 1;29(7):1433-42 PMID: 11266543
  55. The short life span of Saccharomyces cerevisiae sgs1 and srs2 mutants is a composite of normal aging processes and mitotic arrest due to defective recombination.
    Genetics. 2001 Apr;157(4):1531-42 PMID: 11290710
  56. Interactions between the Werner syndrome helicase and DNA polymerase delta specifically facilitate copying of tetraplex and hairpin structures of the d(CGG)n trinucleotide repeat sequence.
    J Biol Chem. 2001 May 11;276(19):16439-46 PMID: 11279038
  57. Potential role for the BLM helicase in recombinational repair via a conserved interaction with RAD51.
    J Biol Chem. 2001 Jun 1;276(22):19375-81 PMID: 11278509
  58. DNA replication forks pause at silent origins near the HML locus in budding yeast.
    Mol Cell Biol. 2001 Aug;21(15):4938-48 PMID: 11438651
  59. Regulation of DNA replication fork progression through damaged DNA by the Mec1/Rad53 checkpoint.
    Nature. 2001 Aug 2;412(6846):553-7 PMID: 11484057
  60. The DNA replication checkpoint response stabilizes stalled replication forks.
    Nature. 2001 Aug 2;412(6846):557-61 PMID: 11484058
  61. hpr1Delta affects ribosomal DNA recombination and cell life span in Saccharomyces cerevisiae.
    Mol Cell Biol. 2002 Jan;22(2):421-9 PMID: 11756539
  62. Suppression of genome instability by redundant S-phase checkpoint pathways in Saccharomyces cerevisiae.
    Proc Natl Acad Sci U S A. 2002 Apr 2;99(7):4500-7 PMID: 11917116
  63. The yeast CDK inhibitor Sic1 prevents genomic instability by promoting replication origin licensing in late G(1).
    Mol Cell. 2002 May;9(5):1067-78 PMID: 12049742
Article Info
Journal
The EMBO journal
Abbr.
EMBO J
ISSN
0261-4189
Published
2003-04-15
Pages
1939-49
Language
English
Region
England
NLM ID
8208664
PMCID
PMC154472
Subset
IM
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