Cartilage proteoglycan aggregates are separated from collagen and other non-proteoglycan protein by preparative rate zonal sedimentation under associative conditions. Dissociative rate zonal sedimentation produces sedimented proteoglycan of lower protein content with a corresponding increase in the amount of less sedimentable protein-rich proteoglycan. An extensive number of sequential rate zonal sedimentations discloses that the proceess of disaggregation involves the separation of proteoglycans varying continuously in composition with no apparent discontinuities in distribution to indicate the presence of distinctively different macromolecules. The variations encompass proteoglycans of low protein content containing less than 2% keratan sulfate and proteoglycans with keratan sulfate as the predominant polysaccharide (present in concentrations greater than 2-fold that of the chondroitin sulfate) and more than a 10-fold increase in protein content.
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