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PMID: 12574069 Published · ppublish English Journal Article Research Support, U.S. Gov't, P.H.S. Review

Molecular recognition and docking algorithms.

Annual review of biophysics and biomolecular structure ·Vol. 32 ·2003-00-00 ·Pages 335-73

Brooijmans N, Kuntz ID

Abstract

Molecular docking is an invaluable tool in modern drug discovery. This review focuses on methodological developments relevant to the field of molecular docking. The forces important in molecular recognition are reviewed and followed by a discussion of how different scoring functions account for these forces. More recent applications of computational chemistry tools involve library design and database screening. Last, we summarize several critical methodological issues that must be addressed in future developments.

MeSH Terms
Algorithms Binding Sites Computer Simulation Databases, Protein Drug Design Ligands Macromolecular Substances Models, Molecular Motion Peptide Library Protein Binding Protein Conformation Proteins Stress, Mechanical
Chemicals
Ligands Macromolecular Substances Peptide Library Proteins
Authors & Affiliations
2 authors, click to expand affiliations / ORCID
Brooijmans Natasja
Chemistry and Chemical Biology Graduate Program University of California San Francisco, San Francisco, California 94143-2240, USA. nbrooij@itsa.ucsf.edu
Kuntz Irwin D
Article Info
Journal
Annual review of biophysics and biomolecular structure
Abbr.
Annu Rev Biophys Biomol Struct
ISSN
1056-8700
Published
2003-00-00
Epub
2003-00-28
Pages
335-73
Language
English
Region
United States
NLM ID
9211097
Subset
IM
Analysis Services
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