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PMID: 12519938 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

DNA Data Bank of Japan (DDBJ) in XML.

Nucleic acids research ·Vol. 31 ·No. 1 ·2003-01-01 ·Pages 13-6

Miyazaki S, Sugawara H, Gojobori T, Tateno Y

Abstract

The DNA Data Bank of Japan (DDBJ, http://www.ddbj.nig.ac.jp) has collected and released more entries and bases than last year. This is mainly due to large-scale submissions from Japanese sequencing teams on mouse, rice, chimpanzee, nematoda and other organisms. The contributions of DDBJ over the past year are 17.3% (entries) and 10.3% (bases) of the combined outputs of the International Nucleotide Sequence Databases (INSD). Our complete genome sequence database, Genome Information Broker (GIB), has been improved by incorporating XML. It is now possible to perform a more sophisticated database search against the new GIB than the ordinary BLAST or FASTA search.

MeSH Terms
Animals Data Collection/statistics & numerical data Databases, Nucleic Acid/statistics & numerical data Escherichia coli/genetics Genomics Japan Mice Sequence Analysis, DNA
Authors & Affiliations
4 authors, click to expand affiliations / ORCID
Miyazaki S
Center for Information Biology and DNA Data Bank of Japan, National Institute of Genetics, Yata, Mishima 411-8540, Japan.
Sugawara H
Gojobori T
Tateno Y
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Article Info
Journal
Nucleic acids research
Abbr.
Nucleic Acids Res
ISSN
1362-4962
DOI
10.1093/nar/gkg088
Published
2003-01-01
Pages
13-6
Language
English
Region
England
NLM ID
0411011
PMCID
PMC165535
Subset
IM
External Links
PubMed source DOI: 10.1093/nar/gkg088 PMC Full Text View journal details
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