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PMID: 12504751 Published · ppublish English Journal Article Research Support, Non-U.S. Gov't

A cross-platform public domain PC image-analysis program for the comet assay.

Mutation research ·Vol. 534 ·No. 1-2 ·2003-01-10 ·Pages 15-20

Końca K, Lankoff A, Banasik A, Lisowska H, Kuszewski T, Góźdź S, Koza Z, Wojcik A

Abstract

The single-cell gel electrophoresis, also known as the comet assay, has gained wide-spread popularity as a simple and reliable method to measure genotoxic and cytotoxic effects of physical and chemical agents as well as kinetics of DNA repair. Cells are generally stained with fluorescent dyes. The analysis of comets--damaged cells which form a typical comet-shaped pattern--is greatly facilitated by the use of a computer image-analysis program. Although several image-analysis programs are available commercially, they are expensive and their source codes are not provided. For Macintosh computers a cost-free public domain macro is available on the Internet. No ready for use, cost-free program exists for the PC platform. We have, therefore, developed such a public domain program under the GNU license for PC computers. The program is called CASP and can be run on a variety of hardware and software platforms. Its practical merit was tested on human lymphocytes exposed to gamma-rays and found to yield reproducible results. The binaries for Windows 95 and Linux, together with the source code can be obtained from: http://www.casp.of.pl.

MeSH Terms
Algorithms Comet Assay Computers Humans Image Processing, Computer-Assisted/methods Internet Lymphocytes/radiation effects Reproducibility of Results Software Software Design User-Computer Interface
Authors & Affiliations
8 authors, click to expand affiliations / ORCID
Końca Krzysztof
Institute of Theoretical Physics, University of Wrocław, Poland.
Lankoff Anna
Banasik Anna
Lisowska Halina
Kuszewski Tomasz
Góźdź Stanisław
Koza Zbigniew
Wojcik Andrzej
Article Info
Journal
Mutation research
Abbr.
Mutat Res
ISSN
0027-5107
Published
2003-01-10
Pages
15-20
Language
English
Region
Netherlands
NLM ID
0400763
Subset
IM
Analysis Services
Analysis Services

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